Variant report

Variant	rs558873143
Chromosome Location	chr15:39189632-39189633
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046994	chr15:38806163-39239014	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv832975	chr15:39011915-39227590	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1054810	chr15:39019900-39578526	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv542359	chr15:39019900-39578526	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv1040746	chr15:39126735-39327690	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv904090	chr15:39138908-39347192	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv457117	chr15:39183430-39380526	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv569207	chr15:39183430-39380526	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv569208	chr15:39183430-39385921	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv569209	chr15:39188421-39385921	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39176200-39197600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr15:39185000-39189800	Enhancers	HUVEC	blood vessel
3	chr15:39185000-39189800	Enhancers	NHDF-Ad	bronchial
4	chr15:39185000-39192000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr15:39185200-39192800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr15:39185400-39190000	Enhancers	HSMMtube	muscle
7	chr15:39185400-39190200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr15:39185400-39191200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr15:39187400-39189800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr15:39187400-39191600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr15:39188000-39189800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr15:39188400-39197000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr15:39188800-39190200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr15:39188800-39191200	Weak transcription	HMEC	breast
15	chr15:39188800-39192000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr15:39189000-39189800	Enhancers	Fetal Lung	lung
17	chr15:39189000-39189800	Weak transcription	NHLF	lung
18	chr15:39189200-39190200	Weak transcription	HSMM	muscle
19	chr15:39189200-39190800	Enhancers	Fetal Heart	heart
20	chr15:39189600-39189800	Enhancers	Fetal Kidney	kidney
21	chr15:39189600-39189800	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr15:39189600-39190000	Weak transcription	Osteobl	bone
23	chr15:39189600-39190400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr15:39189600-39190400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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