Variant report

Variant	rs55889214
Chromosome Location	chr3:23819677-23819678
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs55881337	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56124199	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73050527	1.00[ASN][1000 genomes]
rs73050544	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73050546	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73050548	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73050549	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73050553	0.81[EUR][1000 genomes]
rs73050556	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834637	chr3:23703928-23886144	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23803400-23836800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:23817000-23820400	Enhancers	NHLF	lung
3	chr3:23817600-23820200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:23818200-23819800	Enhancers	NHDF-Ad	bronchial
5	chr3:23818200-23820200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:23818800-23819800	Weak transcription	Fetal Kidney	kidney
7	chr3:23818800-23819800	Weak transcription	Fetal Lung	lung
8	chr3:23818800-23820400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:23819000-23820000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:23819000-23823600	Weak transcription	Right Atrium	heart
11	chr3:23819200-23819800	Weak transcription	Fetal Stomach	stomach
12	chr3:23819600-23820800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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