Variant report

Variant	rs558894365
Chromosome Location	chr4:107038516-107038517
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:107037209..107040065-chr4:107046985..107049286,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799793	chr4:107000462-107062671	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1801716	chr4:107000462-107062671	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv1849248	chr4:107000462-107062671	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv1850577	chr4:107000462-107062671	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv511247	chr4:107022702-107065220	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv879701	chr4:107024776-107163128	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv4450	chr4:107037823-107082669	Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107031600-107052600	Weak transcription	Fetal Thymus	thymus
2	chr4:107031800-107039400	Weak transcription	Brain Angular Gyrus	brain
3	chr4:107031800-107053400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr4:107032000-107052200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:107032000-107058200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr4:107032600-107039600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:107033400-107039800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr4:107033400-107053000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr4:107033600-107052800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr4:107033600-107053400	Weak transcription	Osteobl	bone
11	chr4:107033800-107039000	Weak transcription	HSMMtube	muscle
12	chr4:107033800-107053400	Weak transcription	HSMM	muscle
13	chr4:107034200-107038600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr4:107034200-107040200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr4:107034200-107053400	Weak transcription	Right Ventricle	heart
16	chr4:107034800-107041000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr4:107035000-107039400	Weak transcription	Psoas Muscle	Psoas
18	chr4:107035200-107057200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr4:107035400-107040400	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr4:107035600-107039200	Weak transcription	Fetal Brain Female	brain
21	chr4:107035600-107083200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr4:107035800-107039000	Weak transcription	Brain Germinal Matrix	brain
23	chr4:107035800-107039200	Weak transcription	Rectal Smooth Muscle	rectum
24	chr4:107035800-107039200	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr4:107035800-107040200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr4:107035800-107041000	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr4:107035800-107041600	Weak transcription	Colonic Mucosa	Colon
28	chr4:107035800-107043800	Weak transcription	Thymus	Thymus
29	chr4:107035800-107052200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr4:107035800-107053000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr4:107035800-107053000	Weak transcription	Fetal Lung	lung
32	chr4:107035800-107053200	Weak transcription	Fetal Stomach	stomach
33	chr4:107035800-107053200	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr4:107035800-107053400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr4:107035800-107053400	Weak transcription	Lung	lung
36	chr4:107035800-107053400	Weak transcription	Pancreas	Pancrea
37	chr4:107035800-107053600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr4:107035800-107053600	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr4:107036000-107053200	Weak transcription	Brain Anterior Caudate	brain
40	chr4:107036200-107039000	Weak transcription	Fetal Muscle Trunk	muscle
41	chr4:107036200-107040600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr4:107036200-107052800	Weak transcription	Fetal Muscle Leg	muscle
43	chr4:107037200-107053000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr4:107037400-107039000	Weak transcription	Placenta	Placenta
45	chr4:107037400-107053400	Weak transcription	Brain Cingulate Gyrus	brain
46	chr4:107037400-107053400	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr4:107037600-107039400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr4:107037600-107039600	Weak transcription	Duodenum Mucosa	Duodenum
49	chr4:107037600-107047000	Weak transcription	GM12878-XiMat	blood
50	chr4:107037600-107053400	Weak transcription	Brain Hippocampus Middle	brain

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