Variant report

Variant	rs558900478
Chromosome Location	chr5:164395896-164395897
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:52)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:52 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr5:164395820-164395970	HEK293	kidney:	n/a	n/a
2	CTCF	chr5:164395723-164396014	H1-hESC	embryonic stem cell:	n/a	n/a
3	CTCF	chr5:164395840-164395990	NB4	blood:	n/a	n/a
4	CTCF	chr5:164395824-164395952	GM13977	blood:	n/a	n/a
5	CTCF	chr5:164395800-164395950	GM12871	blood:	n/a	n/a
6	CTCF	chr5:164395760-164395910	GM12874	blood:	n/a	n/a
7	CTCF	chr5:164395840-164395990	A549	lung:	n/a	n/a
8	CTCF	chr5:164395814-164395954	GM12878	blood:	n/a	n/a
9	CTCF	chr5:164395840-164395990	HFF-Myc	foreskin:	n/a	n/a
10	CTCF	chr5:164395820-164395970	GM12875	blood:	n/a	n/a
11	CTCF	chr5:164395724-164396057	GM12878	blood:	n/a	n/a
12	CTCF	chr5:164395780-164395930	GM12873	blood:	n/a	n/a
13	CTCF	chr5:164395800-164395950	HEK293	kidney:	n/a	n/a
14	CTCF	chr5:164395820-164395970	GM12878	blood:	n/a	n/a
15	CTCF	chr5:164395820-164395970	GM12864	blood:	n/a	n/a
16	CTCF	chr5:164395800-164395950	GM12878	blood:	n/a	n/a
17	CTCF	chr5:164395825-164395941	H1-hESC	embryonic stem cell:	n/a	n/a
18	CTCF	chr5:164395780-164395930	GM12868	blood:	n/a	n/a
19	CTCF	chr5:164395730-164396006	H1-hESC	embryonic stem cell:	n/a	n/a
20	CTCF	chr5:164395820-164395970	K562	blood:	n/a	n/a
21	RAD21	chr5:164395754-164396042	H1-hESC	embryonic stem cell:	n/a	n/a
22	CTCF	chr5:164395823-164395946	GM19239	blood:	n/a	n/a
23	CTCF	chr5:164395820-164395970	GM12870	blood:	n/a	n/a
24	CTCF	chr5:164395840-164395990	GM12865	blood:	n/a	n/a
25	RAD21	chr5:164395679-164395995	H1-hESC	embryonic stem cell:	n/a	n/a
26	CTCF	chr5:164395800-164395950	GM12866	blood:	n/a	n/a
27	CTCF	chr5:164395780-164395930	GM12871	blood:	n/a	n/a
28	CTCF	chr5:164395817-164395962	GM19238	blood:	n/a	n/a
29	CTCF	chr5:164395782-164396005	Gliobla	brain:	n/a	n/a
30	CTCF	chr5:164395820-164395970	GM12873	blood:	n/a	n/a
31	CTCF	chr5:164395800-164395950	HEEpiC	esophagus:	n/a	n/a
32	CTCF	chr5:164395823-164395915	GM10266	blood:	n/a	n/a
33	CTCF	chr5:164395820-164395970	Hela-S3	cervix:	n/a	n/a
34	CTCF	chr5:164395819-164395963	A549	lung:	n/a	n/a
35	CTCF	chr5:164395780-164395930	SAEC	small airway:	n/a	n/a
36	CTCF	chr5:164395832-164395912	GM19240	blood:	n/a	n/a
37	CTCF	chr5:164395820-164395970	GM12865	blood:	n/a	n/a
38	CTCF	chr5:164395800-164395950	SK-N-SH_RA	brain:	n/a	n/a
39	CTCF	chr5:164395840-164395990	GM12867	blood:	n/a	n/a
40	CTCF	chr5:164395780-164395930	GM12875	blood:	n/a	n/a
41	CTCF	chr5:164395800-164395950	GM12874	blood:	n/a	n/a
42	CTCF	chr5:164395860-164396010	GM12872	blood:	n/a	n/a
43	CTCF	chr5:164395780-164395930	A549	lung:	n/a	n/a
44	CTCF	chr5:164395800-164395950	HMEC	breast:	n/a	n/a
45	CTCF	chr5:164395840-164395990	HMEC	breast:	n/a	n/a
46	CTCF	chr5:164395780-164395930	WERI-Rb-1	eye:	n/a	n/a
47	CTCF	chr5:164395800-164395950	GM12865	blood:	n/a	n/a
48	CTCF	chr5:164395820-164395970	BE2_C	brain:	n/a	n/a
49	CTCF	chr5:164395834-164395940	GM12891	blood:	n/a	n/a
50	CTCF	chr5:164395800-164395950	GM12872	blood:	n/a	n/a

No data

Variant related genes	Relation type
ENSG00000241956	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995060	chr5:163660200-164620500	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv528624	chr5:164319435-164701201	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv600242	chr5:164391457-164466785	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:164395800-164396000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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