Variant report

Variant	rs558904966
Chromosome Location	chr9:102972616-102972617
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1048674	chr9:102752236-103038259	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1052007	chr9:102766948-103033937	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	esv3366028	chr9:102947446-102973079	Active TSS Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2761274	chr9:102972481-102993911	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102940400-102978000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr9:102953000-102976800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:102953800-102977600	Weak transcription	Fetal Stomach	stomach
4	chr9:102954600-102978000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr9:102955000-102988400	Weak transcription	Dnd41	blood
6	chr9:102955200-102999600	Weak transcription	Lung	lung
7	chr9:102956200-102983400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr9:102957200-102973200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr9:102957400-102977800	Weak transcription	Aorta	Aorta
10	chr9:102958800-103014400	Weak transcription	Hela-S3	cervix
11	chr9:102959000-102984400	Weak transcription	HepG2	liver
12	chr9:102959800-102977600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr9:102959800-102977600	Weak transcription	Ovary	ovary
14	chr9:102959800-102994600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr9:102960800-102978000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr9:102962000-102989200	Weak transcription	Fetal Lung	lung
17	chr9:102964800-102988400	Weak transcription	Fetal Intestine Large	intestine
18	chr9:102965400-102976400	Weak transcription	Fetal Heart	heart
19	chr9:102967600-102975600	Weak transcription	HSMM	muscle
20	chr9:102967600-102977800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr9:102967600-102978400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr9:102967600-102988600	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr9:102969800-102978600	Weak transcription	Right Ventricle	heart
24	chr9:102972000-102972800	Active TSS	Primary monocytes fromperipheralblood	blood
25	chr9:102972000-102972800	Active TSS	Primary T cells fromperipheralblood	blood
26	chr9:102972000-102972800	Active TSS	Primary T helper naive cells from peripheral blood	blood
27	chr9:102972000-102972800	Active TSS	Primary T helper cells PMA-I stimulated	--
28	chr9:102972000-102972800	Active TSS	Primary T regulatory cells fromperipheralblood	blood
29	chr9:102972000-102972800	Active TSS	Adipose Nuclei	Adipose
30	chr9:102972000-102972800	Active TSS	Right Atrium	heart
31	chr9:102972000-102972800	Active TSS	GM12878-XiMat	blood
32	chr9:102972000-102973000	Enhancers	H9 Cell Line	embryonic stem cell
33	chr9:102972000-102973000	Flanking Active TSS	K562	blood
34	chr9:102972000-102988400	Weak transcription	Fetal Intestine Small	intestine
35	chr9:102972200-102972800	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr9:102972200-102972800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
37	chr9:102972200-102972800	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
38	chr9:102972200-102972800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr9:102972200-102973200	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr9:102972200-102973400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr9:102972400-102972800	Active TSS	Primary B cells from cord blood	blood
42	chr9:102972400-102972800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
43	chr9:102972400-102972800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
44	chr9:102972400-102973400	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr9:102972400-102977600	Weak transcription	Left Ventricle	heart
46	chr9:102972400-102988400	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr9:102972400-102991400	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr9:102972400-103017200	Weak transcription	Spleen	Spleen
49	chr9:102972400-103035200	Weak transcription	Esophagus	oesophagus
50	chr9:102972600-102972800	Enhancers	Primary neutrophils fromperipheralblood	blood

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