Variant report

Variant	rs55890723
Chromosome Location	chr3:159182407-159182408
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73874542	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv877695	chr3:159152259-159254385	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3462771	chr3:159180393-159183565	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
4	esv3462769	chr3:159180439-159183523	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv3462770	chr3:159180562-159183448	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv3462772	chr3:159180576-159183448	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159182400-159183000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:159182400-159183000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:159182400-159183200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr3:159182400-159185200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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