Variant report

Variant	rs558909128
Chromosome Location	chr11:75854481-75854482
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75848740..75850557-chr11:75852011..75854715,2	MCF-7	breast:
2	chr11:75848459..75850732-chr11:75852231..75854739,2	K562	blood:

Variant related genes	Relation type
ENSG00000255421	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv394	chr11:75820547-75865777	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1049039	chr11:75827548-76023665	Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv1051472	chr11:75851880-75922608	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv515484	chr11:75854235-75862571	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75826000-75862800	Weak transcription	Hela-S3	cervix
2	chr11:75832000-75861200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:75832600-75857600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr11:75832800-75859400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:75833000-75862800	Weak transcription	K562	blood
6	chr11:75833400-75855000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr11:75833400-75872800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:75834400-75862800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:75839800-75858000	Weak transcription	Pancreas	Pancrea
10	chr11:75841200-75862800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:75843200-75859400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:75843400-75858000	Weak transcription	Right Atrium	heart
13	chr11:75843600-75862600	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr11:75843800-75859800	Weak transcription	Rectal Smooth Muscle	rectum
15	chr11:75843800-75863000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr11:75843800-75863000	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr11:75843800-75863000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr11:75844000-75861200	Weak transcription	NHEK	skin
19	chr11:75844200-75863000	Weak transcription	Brain Angular Gyrus	brain
20	chr11:75844600-75856400	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr11:75846600-75863200	Weak transcription	Fetal Kidney	kidney
22	chr11:75847000-75863400	Weak transcription	Psoas Muscle	Psoas
23	chr11:75849400-75858000	Weak transcription	Fetal Brain Male	brain
24	chr11:75849800-75862800	Weak transcription	Esophagus	oesophagus
25	chr11:75850400-75854600	Strong transcription	Primary B cells from cord blood	blood
26	chr11:75850400-75854800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr11:75850600-75855000	Strong transcription	Primary B cells from peripheral blood	blood
28	chr11:75851200-75854800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:75851200-75855800	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr11:75851200-75863400	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr11:75851400-75854600	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr11:75851400-75854600	Strong transcription	Liver	Liver
33	chr11:75851400-75854600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr11:75851400-75854600	Strong transcription	Fetal Intestine Small	intestine
35	chr11:75851400-75854600	Strong transcription	HepG2	liver
36	chr11:75851400-75854800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr11:75851400-75855000	Strong transcription	GM12878-XiMat	blood
38	chr11:75851600-75854600	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr11:75851600-75854600	Strong transcription	Fetal Stomach	stomach
40	chr11:75851600-75854600	Strong transcription	Lung	lung
41	chr11:75851600-75854600	Strong transcription	Sigmoid Colon	Sigmoid Colon
42	chr11:75851600-75854600	Strong transcription	Stomach Smooth Muscle	stomach
43	chr11:75851600-75854800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr11:75851600-75854800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr11:75851600-75854800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr11:75851600-75863200	Weak transcription	NH-A	brain
47	chr11:75851800-75854600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr11:75851800-75854600	Strong transcription	Primary neutrophils fromperipheralblood	blood
49	chr11:75851800-75854600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr11:75851800-75854600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

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