Variant report

Variant	rs55891227
Chromosome Location	chr14:77719847-77719848
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:77704827..77706771-chr14:77719324..77721062,2	MCF-7	breast:
2	chr14:77719388..77722055-chr14:77734428..77736002,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs384492	0.82[ASN][1000 genomes]
rs422642	0.84[ASN][1000 genomes]
rs877896	0.84[ASN][1000 genomes]
rs888059	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv832834	chr14:77554987-77724357	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv1361	chr14:77707417-77753024	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77697600-77726800	Weak transcription	Brain Substantia Nigra	brain
2	chr14:77698400-77720000	Weak transcription	Pancreas	Pancrea
3	chr14:77708400-77720600	Strong transcription	Fetal Brain Female	brain
4	chr14:77709800-77729600	Weak transcription	Fetal Brain Male	brain
5	chr14:77711200-77731000	Weak transcription	Spleen	Spleen
6	chr14:77712400-77720800	Strong transcription	Pancreatic Islets	Pancreatic Islet
7	chr14:77712800-77720800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr14:77713200-77726800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr14:77713400-77720200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr14:77713400-77720200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr14:77714000-77723400	Weak transcription	Fetal Intestine Large	intestine
12	chr14:77714800-77720800	Strong transcription	Brain Germinal Matrix	brain
13	chr14:77715400-77720000	Strong transcription	Fetal Intestine Small	intestine
14	chr14:77715800-77721400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr14:77716200-77724200	Weak transcription	Brain Angular Gyrus	brain
16	chr14:77718200-77720600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr14:77718200-77720800	Strong transcription	Esophagus	oesophagus
18	chr14:77718400-77726800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr14:77719600-77720400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr14:77719600-77720400	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr14:77719800-77720400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr14:77719800-77720800	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr14:77719800-77720800	Strong transcription	Brain Anterior Caudate	brain

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