Variant report

Variant	rs55891661
Chromosome Location	chr1:57417084-57417085
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17115034	1.00[AMR][1000 genomes]
rs3850545	1.00[AMR][1000 genomes]
rs60411523	1.00[AMR][1000 genomes]
rs61163916	1.00[AMR][1000 genomes]
rs72905258	1.00[AMR][1000 genomes]
rs72907176	1.00[AMR][1000 genomes]
rs72907186	1.00[AMR][1000 genomes]
rs74074396	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57405200-57418200	Weak transcription	Pancreas	Pancrea
2	chr1:57416400-57418000	Weak transcription	Gastric	stomach
3	chr1:57416400-57420000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:57416800-57417800	Strong transcription	Liver	Liver
5	chr1:57417000-57421400	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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