Variant report

Variant	rs558917429
Chromosome Location	chr1:74365147-74365148
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004451	chr1:74107125-74874389	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv534999	chr1:74107125-74874389	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv522147	chr1:74338530-74983835	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1398	chr1:74353390-74398380	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2763561	chr1:74362009-74396896	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:74364000-74365800	Enhancers	Dnd41	blood
2	chr1:74364200-74365800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr1:74364600-74366400	Enhancers	Fetal Intestine Large	intestine
4	chr1:74364800-74365200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:74364800-74365600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr1:74364800-74365600	Enhancers	Fetal Intestine Small	intestine
7	chr1:74364800-74365800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr1:74364800-74365800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr1:74365000-74365400	Enhancers	H1 Cell Line	embryonic stem cell
10	chr1:74365000-74365400	Enhancers	H9 Cell Line	embryonic stem cell
11	chr1:74365000-74365400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr1:74365000-74366000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr1:74365000-74366000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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