Variant report

Variant	rs55891945
Chromosome Location	chr8:131372438-131372439
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:131371033..131372653-chr8:131376514..131378216,2	MCF-7	breast:
2	chr8:131372190..131373878-chr8:131374585..131376826,2	K562	blood:
3	chr8:131370668..131373008-chr8:131383412..131385396,2	K562	blood:
4	chr8:131322070..131324327-chr8:131371483..131374194,2	K562	blood:
5	chr8:131370791..131374454-chr8:131375102..131378755,4	MCF-7	breast:
6	chr8:131352326..131356339-chr8:131369333..131373155,5	K562	blood:
7	chr8:131369806..131373851-chr8:131400186..131403048,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000153317	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs16904265	0.91[EUR][1000 genomes]
rs16904266	0.91[EUR][1000 genomes]
rs55637017	0.91[EUR][1000 genomes]
rs55642195	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55686856	0.91[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs55692599	0.91[EUR][1000 genomes]
rs55758693	0.86[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs55759431	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55867508	0.91[EUR][1000 genomes]
rs55871312	0.91[EUR][1000 genomes]
rs55961633	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55968438	0.91[EUR][1000 genomes]
rs55979731	0.91[EUR][1000 genomes]
rs56194038	0.87[AMR][1000 genomes]
rs56241132	1.00[EUR][1000 genomes]
rs56285703	0.91[EUR][1000 genomes]
rs56297697	0.86[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs56308942	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56313701	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56323699	0.91[EUR][1000 genomes]
rs56336751	0.91[EUR][1000 genomes]
rs56349599	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56385215	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56405390	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6993944	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6994242	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6994477	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6998031	1.00[EUR][1000 genomes]
rs7004723	0.91[EUR][1000 genomes]
rs7005271	0.95[EUR][1000 genomes]
rs7462977	0.91[EUR][1000 genomes]
rs7815532	0.86[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7821742	1.00[EUR][1000 genomes]
rs7836688	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv870148	chr8:131206342-131373989	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv612289	chr8:131370231-131373653	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv1799913	chr8:131370231-131377219	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv1803345	chr8:131370231-131377219	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv612290	chr8:131370231-131381098	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131371200-131372600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:131371400-131372600	Enhancers	Fetal Heart	heart
3	chr8:131371400-131374000	Weak transcription	Small Intestine	intestine
4	chr8:131371400-131374200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:131371400-131376000	Weak transcription	HMEC	breast
6	chr8:131371400-131376400	Weak transcription	Hela-S3	cervix
7	chr8:131371400-131376600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:131371400-131376800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr8:131371400-131382000	Weak transcription	Lung	lung
10	chr8:131371400-131391400	Weak transcription	Spleen	Spleen
11	chr8:131371600-131372600	Weak transcription	HSMM	muscle
12	chr8:131371600-131372600	Weak transcription	NHEK	skin
13	chr8:131371600-131372600	Weak transcription	Osteobl	bone
14	chr8:131371600-131372800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr8:131371600-131372800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr8:131371600-131372800	Weak transcription	Placenta	Placenta
17	chr8:131371600-131373000	Weak transcription	NHDF-Ad	bronchial
18	chr8:131371600-131373000	Weak transcription	NHLF	lung
19	chr8:131371600-131373200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr8:131371600-131373400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr8:131371600-131373400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr8:131371600-131374000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr8:131371600-131374000	Weak transcription	Pancreas	Pancrea
24	chr8:131371600-131374200	Enhancers	Fetal Thymus	thymus
25	chr8:131371600-131374200	Weak transcription	HSMMtube	muscle
26	chr8:131371600-131378600	Weak transcription	Psoas Muscle	Psoas
27	chr8:131371600-131383800	Weak transcription	Ovary	ovary
28	chr8:131371600-131386800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr8:131371600-131389800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr8:131371600-131419800	Weak transcription	Aorta	Aorta
31	chr8:131371800-131372600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr8:131371800-131372600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr8:131371800-131372600	Enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr8:131371800-131372600	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr8:131371800-131373200	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr8:131371800-131373400	Weak transcription	Fetal Brain Female	brain
37	chr8:131371800-131373800	Weak transcription	Brain Cingulate Gyrus	brain
38	chr8:131371800-131373800	Strong transcription	Fetal Muscle Trunk	muscle
39	chr8:131371800-131374000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr8:131371800-131374000	Weak transcription	Left Ventricle	heart
41	chr8:131371800-131374200	Weak transcription	Brain Anterior Caudate	brain
42	chr8:131371800-131374400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr8:131371800-131374600	Enhancers	GM12878-XiMat	blood
44	chr8:131371800-131374800	Strong transcription	A549	lung
45	chr8:131371800-131376000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr8:131371800-131376600	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr8:131371800-131376600	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr8:131371800-131376600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr8:131371800-131376600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr8:131371800-131376600	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links