Variant report

Variant	rs558922560
Chromosome Location	chr15:75143159-75143160
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:75135427..75140750-chr15:75141950..75147054,10	K562	blood:
2	chr15:75142292..75144361-chr15:75184873..75186770,2	K562	blood:

Variant related genes	Relation type
ENSG00000140474	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv904381	chr15:75108636-75242155	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	esv3509322	chr15:75142174-75144662	Strong transcription Genic enhancers Weak transcription Enhancers	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	esv3509323	chr15:75142174-75144662	Strong transcription Weak transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75136200-75144200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:75136200-75155800	Weak transcription	NH-A	brain
3	chr15:75136200-75160000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr15:75136200-75161800	Weak transcription	Fetal Kidney	kidney
5	chr15:75136400-75145400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr15:75136400-75147200	Strong transcription	Sigmoid Colon	Sigmoid Colon
7	chr15:75136400-75149400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr15:75136400-75158000	Weak transcription	NHDF-Ad	bronchial
9	chr15:75136600-75145800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr15:75136600-75146200	Strong transcription	A549	lung
11	chr15:75136600-75146600	Strong transcription	Brain Angular Gyrus	brain
12	chr15:75136600-75146800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:75136600-75146800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr15:75136600-75147200	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr15:75136600-75163000	Weak transcription	Fetal Brain Male	brain
16	chr15:75136800-75143400	Strong transcription	Rectal Mucosa Donor 29	rectum
17	chr15:75136800-75143800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr15:75136800-75144200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr15:75136800-75146600	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr15:75136800-75147000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr15:75136800-75147000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr15:75136800-75147200	Strong transcription	Colonic Mucosa	Colon
23	chr15:75137000-75146400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr15:75137000-75146800	Strong transcription	Brain Germinal Matrix	brain
25	chr15:75137000-75147000	Strong transcription	Dnd41	blood
26	chr15:75137000-75147200	Strong transcription	Lung	lung
27	chr15:75137000-75147400	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr15:75137000-75149800	Strong transcription	Fetal Stomach	stomach
29	chr15:75137000-75164800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr15:75137200-75146800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr15:75137200-75147200	Strong transcription	Cortex derived primary cultured neurospheres	brain
32	chr15:75137200-75147200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr15:75137200-75147200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr15:75137400-75146400	Strong transcription	H1 Cell Line	embryonic stem cell
35	chr15:75137400-75146800	Strong transcription	Brain Hippocampus Middle	brain
36	chr15:75137400-75147400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr15:75137400-75150600	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr15:75137600-75147200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr15:75137600-75147200	Strong transcription	Placenta	Placenta
40	chr15:75137800-75146600	Strong transcription	Brain Inferior Temporal Lobe	brain
41	chr15:75137800-75146600	Strong transcription	HSMMtube	muscle
42	chr15:75138000-75147000	Strong transcription	Stomach Smooth Muscle	stomach
43	chr15:75138200-75147000	Strong transcription	Fetal Thymus	thymus
44	chr15:75138200-75147200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr15:75138200-75147200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr15:75138400-75145800	Strong transcription	Primary B cells from cord blood	blood
47	chr15:75138600-75147200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr15:75138800-75147200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr15:75139000-75146600	Strong transcription	H9 Cell Line	embryonic stem cell
50	chr15:75139200-75144400	Strong transcription	Spleen	Spleen

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