Variant report

Variant	rs55892528
Chromosome Location	chr9:117569248-117569249
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr9:117569208-117569367	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
TNFSF15	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12235514	0.96[AFR][1000 genomes]
rs12550920	0.82[EUR][1000 genomes]
rs2208641	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55914236	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117565000-117569400	Enhancers	Fetal Lung	lung
2	chr9:117565200-117569800	Enhancers	Sigmoid Colon	Sigmoid Colon
3	chr9:117566200-117569600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:117567800-117569400	Flanking Active TSS	Primary B cells from cord blood	blood
5	chr9:117567800-117572000	Enhancers	Primary B cells from peripheral blood	blood
6	chr9:117568000-117569400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
7	chr9:117568000-117569400	Enhancers	Fetal Thymus	thymus
8	chr9:117568000-117569400	Enhancers	Thymus	Thymus
9	chr9:117568000-117569600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr9:117568000-117569600	Enhancers	Fetal Muscle Leg	muscle
11	chr9:117568000-117569800	Enhancers	Primary T cells fromperipheralblood	blood
12	chr9:117568000-117569800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr9:117568000-117569800	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr9:117568000-117569800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr9:117568000-117569800	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr9:117568000-117569800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
17	chr9:117568000-117569800	Enhancers	Pancreas	Pancrea
18	chr9:117568200-117569400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr9:117568200-117569600	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr9:117568200-117570000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr9:117568400-117569600	Enhancers	Esophagus	oesophagus
22	chr9:117568400-117569600	Enhancers	Spleen	Spleen
23	chr9:117568400-117569800	Enhancers	Fetal Intestine Large	intestine
24	chr9:117568400-117569800	Enhancers	Psoas Muscle	Psoas
25	chr9:117568400-117569800	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr9:117568400-117569800	Enhancers	Stomach Mucosa	stomach
27	chr9:117568400-117570200	Enhancers	Fetal Intestine Small	intestine
28	chr9:117568400-117571200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr9:117568600-117569800	Enhancers	Fetal Kidney	kidney
30	chr9:117568800-117569400	Enhancers	Primary hematopoietic stem cells	blood
31	chr9:117568800-117569400	Enhancers	Gastric	stomach
32	chr9:117568800-117569400	Enhancers	NHEK	skin
33	chr9:117568800-117569600	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr9:117568800-117569800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr9:117568800-117569800	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr9:117568800-117572800	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr9:117568800-117576200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr9:117569000-117569400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr9:117569000-117569800	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr9:117569000-117569800	Enhancers	Rectal Mucosa Donor 29	rectum
41	chr9:117569000-117569800	Enhancers	Skeletal Muscle Male	skeletal muscle
42	chr9:117569000-117569800	Enhancers	HMEC	breast
43	chr9:117569000-117570000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr9:117569000-117570000	Enhancers	Duodenum Mucosa	Duodenum
45	chr9:117569000-117571600	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr9:117569000-117573000	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr9:117569000-117573800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr9:117569200-117569400	Enhancers	Lung	lung
49	chr9:117569200-117569600	Enhancers	GM12878-XiMat	blood
50	chr9:117569200-117569800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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