Variant report

Variant	rs55893102
Chromosome Location	chr8:125311201-125311202
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10956170	0.87[AFR][1000 genomes]
rs12114111	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72711166	0.85[ASN][1000 genomes]
rs72711168	0.85[ASN][1000 genomes]
rs72711169	0.85[ASN][1000 genomes]
rs73332111	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762769	chr8:125167256-125480574	Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv521356	chr8:125309055-125404763	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125301400-125329800	Weak transcription	HSMMtube	muscle
2	chr8:125304400-125313600	Weak transcription	Left Ventricle	heart
3	chr8:125304600-125317800	Weak transcription	Fetal Heart	heart
4	chr8:125306200-125328000	Weak transcription	A549	lung
5	chr8:125309400-125331000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr8:125309800-125311800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr8:125310400-125312200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr8:125311200-125312800	Enhancers	Fetal Thymus	thymus
9	chr8:125311200-125333600	Weak transcription	Right Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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