Variant report

Variant	rs55893446
Chromosome Location	chr5:79469365-79469366
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:79463949..79466081-chr5:79468198..79470005,2	K562	blood:
2	chr5:79463949..79466081-chr5:79467625..79470005,3	K562	blood:
3	chr5:79468932..79471004-chr5:79487932..79490106,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs59785286	0.82[AFR][1000 genomes]
rs73772243	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79433600-79476600	Weak transcription	Small Intestine	intestine
2	chr5:79437800-79471400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr5:79438600-79482600	Weak transcription	Psoas Muscle	Psoas
4	chr5:79442000-79487600	Weak transcription	NH-A	brain
5	chr5:79444000-79476800	Weak transcription	Colonic Mucosa	Colon
6	chr5:79449800-79471400	Strong transcription	Dnd41	blood
7	chr5:79450000-79469800	Weak transcription	HSMMtube	muscle
8	chr5:79450000-79477200	Weak transcription	HMEC	breast
9	chr5:79450000-79477600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr5:79450400-79471200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr5:79450400-79472800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr5:79450800-79473800	Strong transcription	Rectal Mucosa Donor 29	rectum
13	chr5:79452400-79470600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr5:79454800-79472800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr5:79456600-79469800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr5:79457000-79469600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr5:79458000-79469600	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr5:79458400-79469600	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr5:79458600-79479600	Weak transcription	Fetal Brain Female	brain
20	chr5:79458800-79469400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr5:79458800-79474000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr5:79459800-79469600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr5:79461200-79473600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr5:79461400-79471600	Strong transcription	Fetal Intestine Large	intestine
25	chr5:79462000-79470600	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr5:79462200-79472600	Weak transcription	NHLF	lung
27	chr5:79462400-79470200	Weak transcription	NHEK	skin
28	chr5:79462400-79472800	Weak transcription	Left Ventricle	heart
29	chr5:79462400-79476600	Weak transcription	Stomach Mucosa	stomach
30	chr5:79462400-79476800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr5:79463600-79471400	Strong transcription	Primary T cells from cord blood	blood
32	chr5:79464000-79473600	Strong transcription	Fetal Stomach	stomach
33	chr5:79464000-79473800	Strong transcription	Fetal Intestine Small	intestine
34	chr5:79464400-79469600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
35	chr5:79464400-79470800	Strong transcription	Liver	Liver
36	chr5:79464400-79473800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr5:79464600-79469400	Strong transcription	H1 Cell Line	embryonic stem cell
38	chr5:79464600-79469600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr5:79464600-79471400	Strong transcription	Sigmoid Colon	Sigmoid Colon
40	chr5:79464800-79469800	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr5:79464800-79471600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr5:79464800-79473800	Strong transcription	Placenta	Placenta
43	chr5:79464800-79477600	Weak transcription	GM12878-XiMat	blood
44	chr5:79465000-79469400	Strong transcription	ES-I3 Cell Line	embryonic stem cell
45	chr5:79465000-79473600	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr5:79465400-79476800	Weak transcription	Right Ventricle	heart
47	chr5:79465400-79476800	Weak transcription	Spleen	Spleen
48	chr5:79465600-79470600	Weak transcription	Pancreas	Pancrea
49	chr5:79465600-79471000	Strong transcription	Primary T helper cells PMA-I stimulated	--
50	chr5:79465600-79477600	Weak transcription	Placenta Amnion	Placenta Amnion

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