Variant report

Variant	rs558963676
Chromosome Location	chr2:49533803-49533804
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:48 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008909	chr2:49281630-49571619	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv993555	chr2:49299168-49781707	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv869321	chr2:49316909-49587401	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1005336	chr2:49422587-49737964	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv535686	chr2:49422587-49737964	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1006675	chr2:49422587-49737965	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv535687	chr2:49422587-49737965	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv998367	chr2:49441886-49795482	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv508141	chr2:49490768-49545631	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv874013	chr2:49498006-49690836	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv874014	chr2:49510173-49668973	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1010867	chr2:49512442-49541178	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
13	nsv581797	chr2:49514731-49554983	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
14	nsv457418	chr2:49514731-49562536	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv581798	chr2:49514731-49562536	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv2722	chr2:49518220-49563391	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv581799	chr2:49519335-49660335	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv581800	chr2:49524316-49539245	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
19	esv3525611	chr2:49532148-49541146	Enhancers	n/a	n/a	inside rSNPs	diseases
20	esv3525610	chr2:49532598-49540496	Enhancers	n/a	n/a	inside rSNPs	diseases
21	esv3525612	chr2:49532598-49540496	Enhancers	n/a	n/a	inside rSNPs	diseases
22	esv2763422	chr2:49533042-49541190	Enhancers	n/a	n/a	inside rSNPs	diseases
23	esv3460131	chr2:49533048-49537946	Enhancers	n/a	n/a	inside rSNPs	diseases
24	nsv829219	chr2:49533165-49539042	Enhancers	n/a	n/a	inside rSNPs	diseases
25	nsv829230	chr2:49533165-49539346	Enhancers	n/a	n/a	inside rSNPs	diseases
26	nsv963951	chr2:49533485-49538871	Enhancers	n/a	n/a	inside rSNPs	diseases
27	nsv517366	chr2:49533498-49537795	Enhancers	n/a	n/a	inside rSNPs	diseases
28	nsv457429	chr2:49533498-49537795	Enhancers	n/a	n/a	inside rSNPs	diseases
29	nsv457441	chr2:49533498-49537795	Enhancers	n/a	n/a	inside rSNPs	diseases
30	nsv457452	chr2:49533498-49537795	Enhancers	n/a	n/a	inside rSNPs	diseases
31	nsv457463	chr2:49533498-49537795	Enhancers	n/a	n/a	inside rSNPs	diseases
32	nsv457474	chr2:49533498-49537795	Enhancers	n/a	n/a	inside rSNPs	diseases
33	nsv457485	chr2:49533498-49537795	Enhancers	n/a	n/a	inside rSNPs	diseases
34	nsv457496	chr2:49533498-49537795	Enhancers	n/a	n/a	inside rSNPs	diseases
35	nsv457507	chr2:49533498-49537795	Enhancers	n/a	n/a	inside rSNPs	diseases
36	nsv581801	chr2:49533498-49537795	Enhancers	n/a	n/a	inside rSNPs	diseases
37	nsv817884	chr2:49533498-49537795	Enhancers	n/a	n/a	inside rSNPs	diseases
38	nsv581802	chr2:49533498-49538493	Enhancers	n/a	n/a	inside rSNPs	diseases
39	nsv581803	chr2:49533498-49538839	Enhancers	n/a	n/a	inside rSNPs	diseases
40	nsv581804	chr2:49533498-49539158	Enhancers	n/a	n/a	inside rSNPs	diseases
41	nsv581805	chr2:49533498-49539245	Enhancers	n/a	n/a	inside rSNPs	diseases
42	esv2421747	chr2:49533498-49541190	Enhancers	n/a	n/a	inside rSNPs	diseases
43	nsv581806	chr2:49533498-49547555	Enhancers	n/a	n/a	inside rSNPs	diseases
44	nsv519183	chr2:49533498-49559547	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
45	nsv581807	chr2:49533498-49660335	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
46	nsv829241	chr2:49533503-49539346	Enhancers	n/a	n/a	inside rSNPs	diseases
47	nsv829253	chr2:49533680-49539346	Enhancers	n/a	n/a	inside rSNPs	diseases
48	esv14729	chr2:49533720-49539282	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:49533800-49534400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr2:49533800-49534400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:49533800-49534800	Enhancers	HUVEC	blood vessel

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