Variant report

Variant	rs55897032
Chromosome Location	chr4:79037498-79037499
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10018454	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10025769	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10030639	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10033428	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10213063	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10213609	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13144972	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs28479828	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs28635454	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2867006	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs28677913	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs28707182	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs28822779	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4345212	0.82[EUR][1000 genomes]
rs4610363	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4634250	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs56006343	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56299187	0.81[EUR][1000 genomes]
rs58969863	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6820400	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6857278	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6857527	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71609399	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs72654653	0.82[EUR][1000 genomes]
rs7666444	0.87[AMR][1000 genomes]
rs7684543	0.87[AMR][1000 genomes]
rs9307335	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs9307336	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9307337	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9307338	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs9307339	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs9307340	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs9991356	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs9994298	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9994422	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs9999763	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534024	chr4:78785189-79437403	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv520625	chr4:79002655-79071788	Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv525530	chr4:79024524-79266563	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79022200-79039200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:79027000-79039400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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