Variant report

Variant	rs558975530
Chromosome Location	chr16:59419812-59419813
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833249	chr16:59282950-59461023	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv906746	chr16:59323025-59423982	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv906747	chr16:59385832-60172030	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv916423	chr16:59411801-59750824	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:59419000-59420600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr16:59419200-59420000	Enhancers	HSMM	muscle
3	chr16:59419200-59420000	Enhancers	HSMMtube	muscle
4	chr16:59419200-59420000	Enhancers	NH-A	brain
5	chr16:59419200-59420000	Enhancers	NHLF	lung
6	chr16:59419200-59420200	Enhancers	Fetal Stomach	stomach
7	chr16:59419200-59420400	Enhancers	Fetal Lung	lung
8	chr16:59419200-59420600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr16:59419200-59420600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr16:59419400-59420000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr16:59419400-59420000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr16:59419400-59420600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr16:59419600-59420000	Enhancers	Adipose Nuclei	Adipose
14	chr16:59419600-59420200	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr16:59419600-59420400	Enhancers	Osteobl	bone
16	chr16:59419800-59420200	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr16:59419800-59420200	Enhancers	Fetal Muscle Leg	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links