The 2.0 version of rSNPBase

Variant report

Variant rs558979326
Chromosome Location chr1:93975360-93975361
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:61 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:93958000-93997200 Weak transcription HSMMtube muscle
2 chr1:93958800-93991800 Weak transcription Gastric stomach
3 chr1:93961000-93988400 Weak transcription HUVEC blood vessel
4 chr1:93962600-93984200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
5 chr1:93964600-93990200 Weak transcription HSMM muscle
6 chr1:93964600-94015200 Weak transcription Fetal Brain Male brain
7 chr1:93965000-94013200 Weak transcription Adipose Nuclei Adipose
8 chr1:93965000-94017400 Weak transcription Stomach Mucosa stomach
9 chr1:93965200-93984600 Weak transcription Duodenum Mucosa Duodenum
10 chr1:93965200-93984800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
11 chr1:93965400-93983600 Weak transcription Pancreatic Islets Pancreatic Islet
12 chr1:93967400-93984200 Weak transcription Rectal Mucosa Donor 31 rectum
13 chr1:93968600-93976800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
14 chr1:93968600-93984400 Weak transcription NHEK skin
15 chr1:93971800-93975400 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
16 chr1:93971800-93975600 ZNF genes & repeats HUES6 Cell Line embryonic stem cell
17 chr1:93971800-93975600 ZNF genes & repeats HUES64 Cell Line embryonic stem cell
18 chr1:93972200-93993800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
19 chr1:93972400-93977000 Weak transcription Lung lung
20 chr1:93972800-93975400 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
21 chr1:93973000-93975400 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
22 chr1:93973000-93975400 Strong transcription Cortex derived primary cultured neurospheres brain
23 chr1:93973200-93975400 ZNF genes & repeats H1 Cell Line embryonic stem cell
24 chr1:93973200-94016800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
25 chr1:93973400-94032000 Weak transcription Esophagus oesophagus
26 chr1:93973800-93975400 ZNF genes & repeats ES-I3 Cell Line embryonic stem cell
27 chr1:93973800-93975400 ZNF genes & repeats HUES48 Cell Line embryonic stem cell
28 chr1:93974000-93985000 Weak transcription Rectal Mucosa Donor 29 rectum
29 chr1:93974200-93975400 Enhancers Primary T helper 17 cells PMA-I stimulated --
30 chr1:93974200-93975400 Strong transcription Fetal Muscle Trunk muscle
31 chr1:93974400-93975400 ZNF genes & repeats iPS-15b Cell Line embryonic stem cell
32 chr1:93974400-93975400 ZNF genes & repeats ES-UCSF4 Cell Line embryonic stem cell
33 chr1:93974400-93975400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
34 chr1:93974400-93975400 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
35 chr1:93974400-93975400 Strong transcription Fetal Brain Female brain
36 chr1:93974400-93975600 ZNF genes & repeats Fetal Intestine Large intestine
37 chr1:93974600-93975400 ZNF genes & repeats hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
38 chr1:93974600-93975400 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
39 chr1:93974600-93975400 ZNF genes & repeats Brain Germinal Matrix brain
40 chr1:93974600-93975400 Enhancers Placenta Placenta
41 chr1:93974800-93975400 Genic enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
42 chr1:93974800-93975400 ZNF genes & repeats H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
43 chr1:93974800-93975400 ZNF genes & repeats Fetal Intestine Small intestine
44 chr1:93974800-93975600 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
45 chr1:93974800-93975600 ZNF genes & repeats iPS DF 19.11 Cell Line embryonic stem cell
46 chr1:93975000-93975400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
47 chr1:93975000-93975600 Strong transcription Breast Myoepithelial Primary Cells Breast
48 chr1:93975000-93976000 Weak transcription Fetal Muscle Leg muscle
49 chr1:93975000-93978000 Weak transcription K562 blood
50 chr1:93975000-93981800 Weak transcription Primary hematopoietic stem cells blood

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Last update: Aug 31, 2015