Variant report

Variant	rs558982210
Chromosome Location	chr20:13541965-13541966
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061303	chr20:13395546-13810990	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv585435	chr20:13410638-13582476	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv916202	chr20:13421724-14043615	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1059817	chr20:13422602-13807968	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv458871	chr20:13447896-13573415	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv585436	chr20:13447896-13573415	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1066810	chr20:13451869-14432454	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv912687	chr20:13507057-13591596	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv1797514	chr20:13541011-13610424	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:13485000-13543600	Weak transcription	Small Intestine	intestine
2	chr20:13492200-13567000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr20:13497800-13563400	Weak transcription	Pancreas	Pancrea
4	chr20:13506400-13558800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr20:13508000-13542000	Weak transcription	Fetal Intestine Small	intestine
6	chr20:13508000-13563600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr20:13508200-13556400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr20:13508400-13546600	Weak transcription	Fetal Kidney	kidney
9	chr20:13508400-13550400	Weak transcription	GM12878-XiMat	blood
10	chr20:13508400-13556000	Weak transcription	HSMM	muscle
11	chr20:13508400-13559600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr20:13508400-13563400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr20:13509200-13548200	Weak transcription	Duodenum Mucosa	Duodenum
14	chr20:13509200-13556000	Weak transcription	Fetal Stomach	stomach
15	chr20:13509800-13547400	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr20:13512800-13548400	Weak transcription	Left Ventricle	heart
17	chr20:13512800-13556000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr20:13513800-13547600	Weak transcription	Primary hematopoietic stem cells	blood
19	chr20:13514800-13546400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr20:13515000-13605600	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr20:13526800-13561800	Weak transcription	Stomach Mucosa	stomach
22	chr20:13526800-13613800	Weak transcription	Hela-S3	cervix
23	chr20:13527000-13556000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr20:13527400-13552200	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr20:13527400-13560000	Weak transcription	HSMMtube	muscle
26	chr20:13527400-13562200	Weak transcription	Aorta	Aorta
27	chr20:13527400-13563400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr20:13527600-13559600	Weak transcription	HMEC	breast
29	chr20:13527800-13563400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr20:13529200-13552200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr20:13529400-13555800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr20:13530600-13547600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr20:13532400-13547800	Weak transcription	Fetal Lung	lung
34	chr20:13533400-13547000	Weak transcription	A549	lung
35	chr20:13534600-13563600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr20:13534600-13563600	Weak transcription	Lung	lung
37	chr20:13534800-13552200	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr20:13535000-13559600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr20:13535000-13563400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr20:13535200-13560200	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr20:13535400-13547400	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr20:13535400-13556400	Weak transcription	Liver	Liver
43	chr20:13535600-13608000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr20:13535800-13547600	Weak transcription	Brain Angular Gyrus	brain
45	chr20:13535800-13552400	Weak transcription	NHDF-Ad	bronchial
46	chr20:13535800-13561400	Weak transcription	NHEK	skin
47	chr20:13536600-13551400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr20:13536600-13556000	Weak transcription	Fetal Muscle Leg	muscle
49	chr20:13536800-13563400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr20:13537400-13563600	Weak transcription	Placenta	Placenta

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