Variant report

Variant	rs558987797
Chromosome Location	chr11:62290606-62290607
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:62288270..62291240-chr11:62300748..62302459,2	K562	blood:
2	chr11:62280455..62282852-chr11:62289731..62292488,2	MCF-7	breast:
3	chr11:62288556..62291730-chr11:62296512..62299721,3	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915636	chr11:62016992-62713565	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1441 gene(s)	inside rSNPs	diseases
2	nsv532283	chr11:62201358-62863475	Enhancers Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1433 gene(s)	inside rSNPs	diseases
3	nsv832180	chr11:62201605-62364828	Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
4	nsv532284	chr11:62220043-62630253	Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1401 gene(s)	inside rSNPs	diseases
5	esv3584599	chr11:62262742-62398050	Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
6	esv1801128	chr11:62276347-62329897	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
7	esv1831183	chr11:62276347-62329897	Transcr. at gene 5' and 3' Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
8	esv3363529	chr11:62290291-62292735	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:62276400-62290800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr11:62276400-62298600	Weak transcription	Pancreas	Pancrea
3	chr11:62276600-62290800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr11:62276600-62292000	Weak transcription	Fetal Kidney	kidney
5	chr11:62276600-62299600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:62276600-62301200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr11:62276800-62298600	Weak transcription	Brain Substantia Nigra	brain
8	chr11:62276800-62298800	Weak transcription	Brain Anterior Caudate	brain
9	chr11:62277600-62303600	Strong transcription	Fetal Stomach	stomach
10	chr11:62279600-62296200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr11:62281000-62304000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr11:62281000-62304800	Strong transcription	Rectal Mucosa Donor 31	rectum
13	chr11:62281200-62303200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr11:62281200-62303400	Strong transcription	Gastric	stomach
15	chr11:62281200-62303800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr11:62281200-62304000	Strong transcription	Fetal Muscle Leg	muscle
17	chr11:62281200-62306200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr11:62281400-62303200	Strong transcription	Lung	lung
19	chr11:62281400-62305600	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr11:62281600-62303400	Strong transcription	Fetal Intestine Small	intestine
21	chr11:62281600-62303600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr11:62281600-62306000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr11:62281800-62295200	Strong transcription	HSMMtube	muscle
24	chr11:62281800-62303600	Strong transcription	Muscle Satellite Cultured Cells	--
25	chr11:62281800-62303600	Strong transcription	Duodenum Mucosa	Duodenum
26	chr11:62281800-62304200	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr11:62281800-62304400	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr11:62281800-62304400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr11:62281800-62304400	Strong transcription	Placenta	Placenta
30	chr11:62282000-62291800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr11:62282000-62303400	Strong transcription	Duodenum Smooth Muscle	Duodenum
32	chr11:62282000-62303600	Strong transcription	Fetal Muscle Trunk	muscle
33	chr11:62282000-62303600	Strong transcription	Osteobl	bone
34	chr11:62282000-62303800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr11:62282000-62304200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr11:62282000-62304400	Strong transcription	Primary B cells from peripheral blood	blood
37	chr11:62282000-62304800	Strong transcription	HSMM	muscle
38	chr11:62282000-62305400	Strong transcription	Sigmoid Colon	Sigmoid Colon
39	chr11:62282400-62290800	Weak transcription	Fetal Heart	heart
40	chr11:62282400-62302200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr11:62282400-62304400	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr11:62282600-62295400	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr11:62282600-62305000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr11:62283000-62297600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr11:62283000-62300200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr11:62283000-62302800	Strong transcription	NH-A	brain
47	chr11:62283000-62304400	Strong transcription	HMEC	breast
48	chr11:62283200-62295600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr11:62283200-62301200	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr11:62283200-62305000	Strong transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links