Variant report

Variant	rs55899328
Chromosome Location	chr7:12761338-12761339
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:12730530..12732171-chr7:12760743..12762407,2	K562	blood:
2	chr7:12725321..12728768-chr7:12759702..12762917,3	K562	blood:

Variant related genes	Relation type
ENSG00000122644	Chromatin interaction

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10227444	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10228478	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10228692	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10229334	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10230505	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10232476	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10232482	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10232492	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10233392	0.84[EUR][1000 genomes]
rs10241274	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10251149	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10251270	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10253749	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10266373	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10271036	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11973922	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11973968	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11980726	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11980770	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11981654	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11984319	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11984405	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13242844	0.88[EUR][1000 genomes]
rs1357820	0.88[EUR][1000 genomes]
rs1357821	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1404521	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1524936	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1830019	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1917489	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1917490	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2058046	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2108471	0.86[EUR][1000 genomes]
rs2140745	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2204398	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2884002	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34243004	0.88[ASN][1000 genomes]
rs34478352	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34687763	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34903132	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35983470	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4428564	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4721128	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4721129	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4721130	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4721131	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4721132	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4721133	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55864612	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56309306	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57452384	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59470504	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6460975	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6460976	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6949193	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6954600	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6955313	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6956267	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6961147	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6965183	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6965250	0.89[EUR][1000 genomes]
rs6965370	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6971540	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6973261	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6977767	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6978369	0.89[EUR][1000 genomes]
rs6978451	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6979212	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7787729	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7789825	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7789972	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7790314	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7790399	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7792091	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7792774	0.89[EUR][1000 genomes]
rs7802097	0.83[EUR][1000 genomes]
rs7806690	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9690109	0.85[ASN][1000 genomes]
rs9690689	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9690691	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9691242	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9692011	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs976215	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024554	chr7:12214722-12967418	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv538735	chr7:12214722-12967418	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv830907	chr7:12661239-12818250	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv932020	chr7:12676890-13239551	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
5	nsv830908	chr7:12695007-12870475	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
6	nsv868830	chr7:12712753-13517417	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
7	esv2422346	chr7:12739291-12883550	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1027501	chr7:12743592-12927109	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv887641	chr7:12747443-12782062	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12755400-12761800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:12755600-12761800	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr7:12755800-12763000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr7:12756200-12761800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:12756200-12768800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:12756400-12762200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr7:12756400-12762400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr7:12756400-12770800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr7:12756600-12770800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr7:12756800-12761800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr7:12756800-12762200	Weak transcription	Fetal Kidney	kidney
12	chr7:12756800-12766000	Weak transcription	Right Ventricle	heart
13	chr7:12756800-12766800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:12758000-12770800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr7:12758800-12761600	Weak transcription	Fetal Brain Male	brain
16	chr7:12759000-12765400	Weak transcription	Left Ventricle	heart
17	chr7:12759000-12766800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr7:12759200-12761800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr7:12759200-12761800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr7:12759200-12762200	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr7:12759200-12770200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr7:12759200-12771200	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr7:12759400-12761600	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr7:12759400-12761800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr7:12759400-12761800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr7:12759600-12762200	Weak transcription	Small Intestine	intestine
27	chr7:12759600-12766600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr7:12759800-12761800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr7:12759800-12761800	Weak transcription	Stomach Mucosa	stomach
30	chr7:12760000-12761600	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr7:12760000-12761800	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr7:12760000-12768800	Weak transcription	HSMMtube	muscle
33	chr7:12760000-12768800	Weak transcription	NHEK	skin
34	chr7:12760200-12761800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr7:12760200-12762000	Enhancers	Psoas Muscle	Psoas
36	chr7:12760200-12762200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr7:12760200-12764600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr7:12760400-12761600	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr7:12760400-12761800	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr7:12760400-12765600	Weak transcription	Placenta	Placenta
41	chr7:12760400-12770600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr7:12760400-12770800	Weak transcription	Primary hematopoietic stem cells	blood
43	chr7:12760600-12761800	Weak transcription	Right Atrium	heart
44	chr7:12760600-12767800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr7:12760800-12761800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr7:12760800-12761800	Weak transcription	A549	lung
47	chr7:12760800-12762600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr7:12760800-12763200	Enhancers	Fetal Intestine Small	intestine
49	chr7:12761000-12761400	Enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr7:12761200-12761600	Enhancers	K562	blood

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