Variant report

Variant	rs55900984
Chromosome Location	chr2:152298751-152298752
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:152285997..152287545-chr2:152296658..152299198,2	K562	blood:
2	chr2:152285997..152288359-chr2:152296614..152299198,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10497084	0.84[ASN][1000 genomes]
rs11896481	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12052998	0.80[ASN][1000 genomes]
rs16830019	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16830036	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16830047	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16830059	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16830061	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16830067	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16830086	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16830090	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16830096	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16830159	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16830228	0.80[ASN][1000 genomes]
rs1993206	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2288206	0.82[ASN][1000 genomes]
rs2288211	0.80[ASN][1000 genomes]
rs3732308	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4468813	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4491723	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4494741	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4664057	0.84[ASN][1000 genomes]
rs4664058	0.84[ASN][1000 genomes]
rs55654831	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs55982073	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs56224718	0.81[ASN][1000 genomes]
rs56898485	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62169373	0.91[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs62169374	0.91[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs62169378	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62169380	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62169382	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62169384	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62169385	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62169386	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6726640	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6733645	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6742953	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72860229	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72860230	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72860235	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72860236	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7422009	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7593710	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012891	chr2:152019809-152306897	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1013484	chr2:152028515-152473913	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv535983	chr2:152028515-152473913	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv1012139	chr2:152114637-152389516	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv1011339	chr2:152114637-152392940	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv999748	chr2:152135514-152476396	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
7	nsv834418	chr2:152205803-152385516	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:152267600-152379400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:152267800-152340400	Weak transcription	Stomach Mucosa	stomach
3	chr2:152268000-152342800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr2:152268200-152303000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:152268200-152319400	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr2:152268200-152320800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr2:152268200-152327800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr2:152268200-152328400	Strong transcription	H1 Cell Line	embryonic stem cell
9	chr2:152268200-152328600	Strong transcription	Fetal Thymus	thymus
10	chr2:152268400-152327800	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr2:152268600-152300200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
12	chr2:152268600-152319200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr2:152268600-152326800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr2:152268600-152327800	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr2:152268600-152334400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr2:152268600-152342600	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr2:152268800-152299800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr2:152268800-152319600	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr2:152268800-152326800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr2:152268800-152327800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr2:152268800-152327800	Strong transcription	Primary neutrophils fromperipheralblood	blood
22	chr2:152269400-152327200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr2:152272400-152319200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr2:152272400-152327800	Strong transcription	Dnd41	blood
25	chr2:152275800-152310000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr2:152277000-152301400	Weak transcription	Fetal Heart	heart
27	chr2:152278600-152310200	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr2:152282600-152313800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr2:152282800-152315800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr2:152283800-152334000	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr2:152284200-152327000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr2:152284600-152327800	Strong transcription	HepG2	liver
33	chr2:152285000-152299000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr2:152285000-152303400	Strong transcription	Osteobl	bone
35	chr2:152285000-152314200	Strong transcription	HMEC	breast
36	chr2:152285000-152327800	Strong transcription	Placenta	Placenta
37	chr2:152285200-152306200	Strong transcription	Liver	Liver
38	chr2:152285200-152306200	Strong transcription	HSMM	muscle
39	chr2:152285200-152315400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr2:152285200-152327600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr2:152285200-152327800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr2:152285200-152331200	Strong transcription	Adipose Nuclei	Adipose
43	chr2:152285600-152308400	Strong transcription	Cortex derived primary cultured neurospheres	brain
44	chr2:152288800-152304200	Weak transcription	Colonic Mucosa	Colon
45	chr2:152288800-152309200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr2:152289400-152301200	Weak transcription	Small Intestine	intestine
47	chr2:152290000-152300600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr2:152290600-152323400	Weak transcription	Aorta	Aorta
49	chr2:152291400-152314600	Strong transcription	Primary B cells from peripheral blood	blood
50	chr2:152291600-152300200	Strong transcription	Muscle Satellite Cultured Cells	--

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