Variant report

Variant	rs559035392
Chromosome Location	chr2:100937858-100937859
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:100908542..100909110-chr2:100937511..100938311,3	MCF-7	breast:
2	chr2:100937836..100939384-chr2:100985447..100988278,2	K562	blood:
3	chr2:100877863..100879986-chr2:100936694..100939073,4	MCF-7	breast:
4	chr2:100104533..100107300-chr2:100936927..100940750,3	MCF-7	breast:
5	chr2:100924962..100929082-chr2:100936842..100940898,4	K562	blood:
6	chr2:100919515..100922139-chr2:100935944..100938623,2	K562	blood:
7	chr2:100629972..100631740-chr2:100936209..100938926,2	MCF-7	breast:
8	chr2:100920038..100923906-chr2:100937053..100939083,4	MCF-7	breast:
9	chr2:100936794..100939483-chr2:101033248..101035645,2	K562	blood:
10	chr2:100937545..100939086-chr2:100943164..100946090,2	K562	blood:
11	chr2:100936567..100938994-chr2:101033479..101035726,2	MCF-7	breast:
12	chr2:100924962..100929454-chr2:100936842..100940898,4	K562	blood:
13	chr2:100936347..100938622-chr2:101175344..101178245,2	K562	blood:
14	chr2:100937085..100941836-chr2:101033510..101036438,4	MCF-7	breast:
15	chr2:100907864..100908724-chr2:100937511..100938051,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000135945	Chromatin interaction
ENSG00000269383	Chromatin interaction
ENSG00000115526	Chromatin interaction
ENSG00000170500	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007777	chr2:100816913-101308914	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv535844	chr2:100816913-101308914	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv834311	chr2:100816917-100990036	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv582531	chr2:100908508-101207639	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	esv2753837	chr2:100928086-100955814	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv3323401	chr2:100935920-100940518	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	esv3359521	chr2:100937345-100939893	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	esv3501611	chr2:100937370-100939668	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	esv3501612	chr2:100937370-100939668	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100935800-100939400	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr2:100936000-100938800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr2:100936000-100939400	Active TSS	A549	lung
4	chr2:100936800-100939400	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr2:100937000-100938000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
6	chr2:100937000-100938000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
7	chr2:100937000-100939200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
8	chr2:100937000-100939400	Active TSS	Breast Myoepithelial Primary Cells	Breast
9	chr2:100937000-100939400	Active TSS	Ovary	ovary
10	chr2:100937000-100939400	Active TSS	Stomach Smooth Muscle	stomach
11	chr2:100937200-100938000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
12	chr2:100937200-100938200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
13	chr2:100937200-100939000	Active TSS	Left Ventricle	heart
14	chr2:100937200-100939000	Active TSS	Rectal Smooth Muscle	rectum
15	chr2:100937200-100939200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
16	chr2:100937200-100939200	Active TSS	Brain Hippocampus Middle	brain
17	chr2:100937200-100939200	Flanking Bivalent TSS/Enh	Lung	lung
18	chr2:100937200-100939400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
19	chr2:100937200-100939400	Active TSS	Brain Anterior Caudate	brain
20	chr2:100937200-100939400	Active TSS	Right Atrium	heart
21	chr2:100937400-100938000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
22	chr2:100937400-100938000	Flanking Active TSS	Right Ventricle	heart
23	chr2:100937400-100938200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr2:100937400-100938200	Flanking Active TSS	Adipose Nuclei	Adipose
25	chr2:100937400-100938200	Active TSS	Fetal Kidney	kidney
26	chr2:100937400-100938800	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland
27	chr2:100937400-100939200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
28	chr2:100937400-100939200	Active TSS	Gastric	stomach
29	chr2:100937400-100939400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
30	chr2:100937400-100939400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
31	chr2:100937400-100939400	Active TSS	Brain Angular Gyrus	brain
32	chr2:100937400-100939400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
33	chr2:100937600-100938000	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr2:100937600-100938000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr2:100937600-100938000	Flanking Active TSS	Esophagus	oesophagus
36	chr2:100937600-100938000	Bivalent Enhancer	Spleen	Spleen
37	chr2:100937600-100938000	Flanking Bivalent TSS/Enh	NH-A	brain
38	chr2:100937600-100938200	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr2:100937600-100938200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr2:100937600-100938200	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
41	chr2:100937600-100938400	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr2:100937600-100938800	Bivalent/Poised TSS	Colonic Mucosa	Colon
43	chr2:100937600-100939000	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
44	chr2:100937600-100939000	Active TSS	K562	blood
45	chr2:100937600-100939200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr2:100937600-100939200	Active TSS	Aorta	Aorta
47	chr2:100937600-100939200	Active TSS	Brain Substantia Nigra	brain
48	chr2:100937600-100939200	Active TSS	Colon Smooth Muscle	Colon
49	chr2:100937600-100939400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
50	chr2:100937600-100939400	Active TSS	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links