Variant report

Variant	rs559042760
Chromosome Location	chr11:119808952-119808953
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv832285	chr11:119789595-119957724	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv3348842	chr11:119808427-119809271	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119803000-119809000	Enhancers	Fetal Muscle Leg	muscle
2	chr11:119805400-119809200	Enhancers	Brain Hippocampus Middle	brain
3	chr11:119805600-119809000	Enhancers	Brain Angular Gyrus	brain
4	chr11:119805600-119809800	Enhancers	Brain Cingulate Gyrus	brain
5	chr11:119805800-119809000	Enhancers	Brain Substantia Nigra	brain
6	chr11:119806600-119809400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr11:119807200-119809600	Weak transcription	Fetal Heart	heart
8	chr11:119807400-119809200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:119807400-119812000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr11:119808400-119809800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr11:119808600-119809000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr11:119808600-119809000	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr11:119808600-119809400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr11:119808800-119809600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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