Variant report

Variant	rs559057635
Chromosome Location	chr2:64088271-64088272
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:63925927..63926628-chr2:64088095..64088826,2	K562	blood:
2	chr2:63714664..63715551-chr2:64088116..64089010,2	MCF-7	breast:
3	chr2:64087116..64089164-chr2:64092966..64094614,2	K562	blood:
4	chr2:63918879..63919960-chr2:64088096..64089552,8	MCF-7	breast:
5	chr2:63918869..63919742-chr2:64088240..64089096,3	MCF-7	breast:
6	chr2:63925946..63926752-chr2:64088066..64088909,2	MCF-7	breast:
7	chr2:63918719..63919714-chr2:64088104..64089017,6	K562	blood:
8	chr2:64066782..64070718-chr2:64080924..64091365,11	MCF-7	breast:
9	chr2:64067087..64069553-chr2:64087095..64089852,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000169764	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013375	chr2:63969820-64231550	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv3519238	chr2:64087911-64089285	Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3519239	chr2:64087911-64089285	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3459595	chr2:64088179-64090097	Weak transcription Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3459597	chr2:64088186-64090115	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3513333	chr2:64088206-64090089	Weak transcription Genic enhancers Strong transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3513329	chr2:64088210-64090035	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3513331	chr2:64088230-64090039	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3513332	chr2:64088256-64090040	Strong transcription Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv3513334	chr2:64088260-64090035	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:64070200-64103000	Weak transcription	Gastric	stomach
2	chr2:64077000-64089000	Weak transcription	Fetal Brain Male	brain
3	chr2:64077000-64100200	Weak transcription	Ovary	ovary
4	chr2:64078000-64108000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr2:64081800-64089800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr2:64081800-64100600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr2:64082200-64089600	Weak transcription	Stomach Mucosa	stomach
8	chr2:64082200-64091400	Strong transcription	H1 Cell Line	embryonic stem cell
9	chr2:64082200-64092400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr2:64082200-64100200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr2:64082200-64110000	Weak transcription	Colon Smooth Muscle	Colon
12	chr2:64082600-64088800	Strong transcription	HepG2	liver
13	chr2:64082600-64089400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr2:64083000-64089400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr2:64083000-64089600	Strong transcription	Muscle Satellite Cultured Cells	--
16	chr2:64083000-64123000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr2:64083000-64129200	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr2:64083200-64089600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr2:64083200-64089600	Strong transcription	NH-A	brain
20	chr2:64083200-64090200	Strong transcription	Fetal Muscle Leg	muscle
21	chr2:64083200-64091600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr2:64083200-64092000	Strong transcription	Fetal Lung	lung
23	chr2:64083200-64097800	Weak transcription	Right Atrium	heart
24	chr2:64083200-64110200	Weak transcription	Small Intestine	intestine
25	chr2:64083200-64110600	Weak transcription	Pancreas	Pancrea
26	chr2:64083400-64088400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr2:64083400-64089600	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr2:64083400-64091600	Strong transcription	H9 Cell Line	embryonic stem cell
29	chr2:64083600-64088400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr2:64083600-64088400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr2:64083600-64088800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr2:64083600-64089600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
33	chr2:64083600-64092000	Strong transcription	Placenta	Placenta
34	chr2:64083600-64095400	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr2:64083800-64089000	Strong transcription	HUES64 Cell Line	embryonic stem cell
36	chr2:64083800-64089400	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr2:64084000-64088400	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr2:64084000-64092000	Strong transcription	Adipose Nuclei	Adipose
39	chr2:64084000-64095600	Genic enhancers	Dnd41	blood
40	chr2:64084200-64094000	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr2:64084600-64100000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr2:64084800-64088800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr2:64084800-64092800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr2:64085000-64088400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr2:64085000-64089800	Weak transcription	Fetal Intestine Small	intestine
46	chr2:64085000-64090400	Strong transcription	Thymus	Thymus
47	chr2:64085000-64092600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr2:64085200-64088400	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr2:64085200-64089000	Strong transcription	ES-I3 Cell Line	embryonic stem cell
50	chr2:64085400-64088800	Weak transcription	HSMMtube	muscle

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