Variant report

Variant	rs559058012
Chromosome Location	chr14:104928328-104928329
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:104913762..104916000-chr14:104927543..104930360,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1826669	chr14:104554461-105065941	Enhancers Genic enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1049810	chr14:104577600-105060539	Bivalent Enhancer Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv530812	chr14:104775571-105364883	Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
4	esv2751159	chr14:104778024-104986402	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1044069	chr14:104789101-104938308	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv2761599	chr14:104789113-105067734	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv566042	chr14:104792254-104937554	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv456444	chr14:104792254-104952144	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv566043	chr14:104792254-104952144	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	esv2751161	chr14:104807712-104962955	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	esv2830001	chr14:104839816-104937554	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv902368	chr14:104839816-104947517	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv519840	chr14:104884605-104961635	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv902369	chr14:104896538-104983655	Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv902370	chr14:104907273-104967252	Bivalent/Poised TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	esv3427177	chr14:104926923-104928774	Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	esv3321890	chr14:104926932-104929780	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:104926800-104929600	Enhancers	Fetal Brain Male	brain
2	chr14:104927000-104928400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
3	chr14:104927200-104928600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
4	chr14:104927200-104928800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
5	chr14:104927200-104928800	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
6	chr14:104927200-104929000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr14:104927400-104928400	Active TSS	H9 Cell Line	embryonic stem cell
8	chr14:104927400-104928400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr14:104927400-104928400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr14:104927400-104928600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
11	chr14:104927400-104928600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr14:104927400-104928600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
13	chr14:104927400-104928800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
14	chr14:104927400-104928800	Bivalent/Poised TSS	Brain Angular Gyrus	brain
15	chr14:104927400-104928800	Enhancers	Gastric	stomach
16	chr14:104927400-104928800	Enhancers	Pancreas	Pancrea
17	chr14:104927400-104929000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
18	chr14:104927600-104928400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
19	chr14:104927600-104928400	Bivalent Enhancer	Left Ventricle	heart
20	chr14:104927600-104928600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr14:104927600-104928600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr14:104927600-104928600	Active TSS	Fetal Brain Female	brain
23	chr14:104927600-104928600	Bivalent/Poised TSS	Psoas Muscle	Psoas
24	chr14:104927600-104928800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
25	chr14:104927600-104928800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
26	chr14:104927800-104928400	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr14:104927800-104928400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
28	chr14:104927800-104928600	Bivalent Enhancer	Spleen	Spleen
29	chr14:104927800-104928600	Bivalent/Poised TSS	HSMM	muscle
30	chr14:104928000-104928400	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr14:104928000-104928400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr14:104928000-104928400	Flanking Bivalent TSS/Enh	Lung	lung
33	chr14:104928000-104928600	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
34	chr14:104928000-104928600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr14:104928000-104928600	Bivalent/Poised TSS	Brain Anterior Caudate	brain
36	chr14:104928000-104928600	Flanking Active TSS	Right Ventricle	heart
37	chr14:104928000-104928800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr14:104928000-104928800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr14:104928000-104928800	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
40	chr14:104928000-104928800	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
41	chr14:104928000-104928800	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
42	chr14:104928000-104928800	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
43	chr14:104928000-104928800	Flanking Active TSS	Ovary	ovary
44	chr14:104928200-104928400	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr14:104928200-104928400	Bivalent/Poised TSS	Primary hematopoietic stem cells	blood
46	chr14:104928200-104928400	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
47	chr14:104928200-104928400	Flanking Bivalent TSS/Enh	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr14:104928200-104928400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr14:104928200-104928400	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
50	chr14:104928200-104928400	Flanking Active TSS	Brain Germinal Matrix	brain

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