Variant report

Variant	rs559059423
Chromosome Location	chr13:79896309-79896310
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:79887290..79888796-chr13:79894827..79897336,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv976249	chr13:79888890-79898094	Strong transcription Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv900586	chr13:79892722-79968467	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv900587	chr13:79894736-79956691	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:79882200-79899200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr13:79882200-79907400	Weak transcription	Fetal Muscle Leg	muscle
3	chr13:79882200-79907600	Weak transcription	Brain Anterior Caudate	brain
4	chr13:79882200-79909800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr13:79882400-79904400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr13:79882400-79905000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr13:79882400-79911200	Weak transcription	Left Ventricle	heart
8	chr13:79882400-79911200	Weak transcription	Ovary	ovary
9	chr13:79882400-79914400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr13:79882400-79925000	Weak transcription	HSMMtube	muscle
11	chr13:79884000-79899400	Weak transcription	Psoas Muscle	Psoas
12	chr13:79884000-79905200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr13:79884400-79909000	Weak transcription	Brain Hippocampus Middle	brain
14	chr13:79886400-79911200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr13:79886600-79900000	Weak transcription	Fetal Kidney	kidney
16	chr13:79886600-79950200	Weak transcription	Fetal Brain Male	brain
17	chr13:79887000-79904600	Weak transcription	Brain Substantia Nigra	brain
18	chr13:79887000-79907800	Weak transcription	Colon Smooth Muscle	Colon
19	chr13:79887200-79946600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr13:79887800-79907800	Weak transcription	NHLF	lung
21	chr13:79888000-79942800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr13:79888200-79947000	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr13:79888400-79900000	Weak transcription	A549	lung
24	chr13:79888400-79947000	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr13:79888600-79897400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr13:79889400-79905000	Weak transcription	Fetal Intestine Small	intestine
27	chr13:79889400-79909800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr13:79889600-79907800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr13:79889800-79899400	Weak transcription	K562	blood
30	chr13:79889800-79909800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr13:79889800-79916200	Weak transcription	Fetal Heart	heart
32	chr13:79890400-79905000	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr13:79890800-79896600	Strong transcription	HMEC	breast
34	chr13:79891000-79896600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr13:79891200-79897000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr13:79891200-79898000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr13:79891200-79900800	Strong transcription	HSMM	muscle
38	chr13:79891400-79911200	Weak transcription	Esophagus	oesophagus
39	chr13:79891600-79897600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
40	chr13:79891600-79905000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr13:79891600-79911200	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr13:79891600-79946800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr13:79891600-79947000	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr13:79891600-79947000	Strong transcription	Dnd41	blood
45	chr13:79891800-79896600	Strong transcription	Adipose Nuclei	Adipose
46	chr13:79891800-79896600	Strong transcription	Liver	Liver
47	chr13:79891800-79896600	Strong transcription	Duodenum Mucosa	Duodenum
48	chr13:79891800-79896800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr13:79891800-79896800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr13:79891800-79900000	Weak transcription	NHEK	skin

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