Variant report

Variant	rs559081453
Chromosome Location	chr17:45249580-45249581
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr17:45248978-45249599	SH-SY5Y	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr17:45249463..45251128-chr17:45254076..45256037,2	K562	blood:
2	chr17:45247336..45250133-chr17:45265157..45267526,3	MCF-7	breast:
3	chr17:45249552..45252803-chr17:45263494..45265675,3	MCF-7	breast:

Variant related genes	Relation type
CDC27	TF binding region
ENSG00000004897	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062983	chr17:45030095-45789543	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv833467	chr17:45063935-45252624	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv3584	chr17:45246216-45265642	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv3790	chr17:45247093-45261518	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3344584	chr17:45247298-45258989	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv6873	chr17:45247370-45266575	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv978432	chr17:45249035-45250065	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3438623	chr17:45249255-45266618	Genic enhancers Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	esv3437669	chr17:45249306-45259022	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	esv8330	chr17:45249307-45266621	Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	esv3314728	chr17:45249324-45258982	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	esv3314730	chr17:45249324-45258982	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	esv3431737	chr17:45249325-45259054	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
14	esv3374428	chr17:45249343-45266580	Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
15	esv3362151	chr17:45249372-45258977	ZNF genes & repeats Strong transcription Genic enhancers Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
16	esv3450592	chr17:45249392-45258947	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:45246400-45251600	Weak transcription	Fetal Brain Female	brain
2	chr17:45246600-45251600	Weak transcription	Brain Germinal Matrix	brain
3	chr17:45246800-45251200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr17:45246800-45254400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr17:45247600-45255400	Strong transcription	HepG2	liver
6	chr17:45248400-45250800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr17:45249000-45249600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
8	chr17:45249200-45249600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
9	chr17:45249200-45249600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
10	chr17:45249200-45249600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr17:45249200-45249600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr17:45249200-45249600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr17:45249200-45249600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
14	chr17:45249200-45249600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr17:45249200-45249600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr17:45249200-45249600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr17:45249200-45249600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr17:45249200-45249600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr17:45249200-45249600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
20	chr17:45249200-45249600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
21	chr17:45249200-45249600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
22	chr17:45249200-45249600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr17:45249200-45249600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
24	chr17:45249200-45249600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
25	chr17:45249200-45249600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
26	chr17:45249200-45249600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr17:45249200-45249600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr17:45249200-45249600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
29	chr17:45249200-45249600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr17:45249200-45249600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr17:45249200-45249600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
32	chr17:45249200-45249600	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr17:45249200-45249600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
34	chr17:45249200-45249600	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
35	chr17:45249200-45249600	ZNF genes & repeats	Primary B cells from cord blood	blood
36	chr17:45249200-45249600	ZNF genes & repeats	Primary T cells from cord blood	blood
37	chr17:45249200-45249600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
38	chr17:45249200-45249600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
39	chr17:45249200-45249600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
40	chr17:45249200-45249600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
41	chr17:45249200-45249600	Flanking Bivalent TSS/Enh	Primary T helper naive cells from peripheral blood	blood
42	chr17:45249200-45249600	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
43	chr17:45249200-45249600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
44	chr17:45249200-45249600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
45	chr17:45249200-45249600	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
46	chr17:45249200-45249600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
47	chr17:45249200-45249600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
48	chr17:45249200-45249600	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr17:45249200-45249600	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
50	chr17:45249200-45249600	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood

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