Variant report

Variant	rs559105399
Chromosome Location	chr2:113762281-113762282
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr2:113762280-113762330	HRPEpiC	eye:	n/a
2	chr2:113762280-113762330	AoSMC	blood vessel:	n/a
3	chr2:113762280-113762330	NH-A	brain:	n/a
4	chr2:113762280-113762330	PrEC	prostate:	n/a
5	chr2:113762280-113762330	NHDF-neo	bronchial:	n/a
6	chr2:113762280-113762330	IMR90	lung:	fetal
7	chr2:113762280-113762330	MCF10A-Er-Src	breast:	n/a
8	chr2:113762280-113762330	RPTEC	kidney:	n/a
9	chr2:113762280-113762330	SK-N-SH	brain:	n/a
10	chr2:113762280-113762330	NT2-D1	testis:	n/a
11	chr2:113762280-113762330	AG09309	skin:	n/a
12	chr2:113762280-113762330	Jurkat	blood:	n/a
13	chr2:113762280-113762330	HCT-116	colon:	n/a
14	chr2:113762280-113762330	GM19239	blood:	n/a
15	chr2:113762280-113762330	HepG2	liver:	n/a
16	chr2:113762280-113762330	GM06990	blood:	n/a
17	chr2:113762280-113762330	Hepatocyte	liver:	n/a
18	chr2:113762280-113762330	HRE	kidney:	n/a
19	chr2:113762280-113762330	HCPEpiC	choroid plexus:	n/a
20	chr2:113762280-113762330	CMK	blood:	n/a
21	chr2:113762280-113762330	ovcar-3	ovarian:	n/a
22	chr2:113762280-113762330	HAEpiC	amniotic membrane:	n/a
23	chr2:113762280-113762330	HCM	heart:	n/a
24	chr2:113762280-113762330	PANC-1	pancreas:	n/a
25	chr2:113762280-113762330	H1-hESC	embryonic stem cell:	embryo
26	chr2:113762280-113762330	A549	lung:	n/a
27	chr2:113762280-113762330	K562	blood:	n/a
28	chr2:113762280-113762330	GM12878	blood:	n/a
29	chr2:113762280-113762330	MCF-7	breast:	n/a
30	chr2:113762280-113762330	HUVEC	blood vessel:	n/a
31	chr2:113762280-113762330	NB4	blood:	n/a
32	chr2:113762280-113762330	ProgFib	skin:	n/a
33	chr2:113762280-113762330	GM12891	blood:	n/a
34	chr2:113762280-113762330	HEK293	kidney:	embryo
35	chr2:113762280-113762330	SK-N-SH_RA	brain:	n/a
36	chr2:113762280-113762330	GM12892	blood:	n/a
37	chr2:113762280-113762330	BE2_C	brain:	n/a
38	chr2:113762280-113762330	HL-60	blood:	n/a
39	chr2:113762280-113762330	HCF	heart:	n/a
40	chr2:113762280-113762330	ECC-1	luminal epithelium:	n/a
41	chr2:113762280-113762330	T-47D	breast:	n/a
42	chr2:113762280-113762330	Caco-2	colon:	n/a
43	chr2:113762280-113762330	AG04449	skin:	fetal
44	chr2:113762280-113762330	HEEpiC	esophagus:	n/a
45	chr2:113762280-113762330	SKMC	muscle:	n/a
46	chr2:113762280-113762330	U87	brain:	n/a
47	chr2:113762280-113762330	AG09319	gingival:	n/a
48	chr2:113762280-113762330	AG10803	skin:	n/a
49	chr2:113762280-113762330	PFSK-1	brain:	n/a
50	chr2:113762280-113762330	NHBE	bronchial:	n/a

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:113751007..113752612-chr2:113760021..113762623,2	K562	blood:
2	chr2:113751007..113754364-chr2:113757829..113763549,5	K562	blood:

No data

Variant related genes	Relation type
IL36A	CpG island
ENSG00000232090	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532471	chr2:113682449-113862981	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv997348	chr2:113688093-113986508	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1007254	chr2:113726982-113887782	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv535894	chr2:113726982-113887782	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv874878	chr2:113742734-113776076	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv963895	chr2:113760993-113772508	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113759200-113765000	Weak transcription	Primary T cells from cord blood	blood

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