Variant report

Variant	rs55911151
Chromosome Location	chr3:42530618-42530619
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs58638041	0.80[AFR][1000 genomes]
rs59378516	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6798815	0.80[AFR][1000 genomes]
rs73829381	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529987	chr3:41921995-42591771	Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv1005533	chr3:41953873-42596375	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	esv1804804	chr3:42515186-42582403	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42519000-42531800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:42528200-42531200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr3:42528200-42535400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr3:42528600-42530800	Weak transcription	Primary B cells from cord blood	blood
5	chr3:42529000-42531400	Weak transcription	Colon Smooth Muscle	Colon
6	chr3:42529800-42531000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:42530200-42531000	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr3:42530200-42532200	Enhancers	Fetal Muscle Trunk	muscle
9	chr3:42530200-42532400	Enhancers	Gastric	stomach
10	chr3:42530200-42532600	Enhancers	Stomach Mucosa	stomach
11	chr3:42530200-42535200	Enhancers	Placenta	Placenta
12	chr3:42530200-42535600	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr3:42530200-42535600	Enhancers	Lung	lung
14	chr3:42530400-42532400	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr3:42530600-42531400	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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