Variant report

Variant	rs559117962
Chromosome Location	chr5:60963235-60963236
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3470515	chr5:60962705-60963440	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
2	esv3470516	chr5:60962840-60963321	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60955200-60974400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:60960800-60965400	Weak transcription	Ovary	ovary
3	chr5:60962000-60965600	Enhancers	Brain Cingulate Gyrus	brain
4	chr5:60962200-60965000	Enhancers	Brain Hippocampus Middle	brain
5	chr5:60962200-60969000	Weak transcription	Left Ventricle	heart
6	chr5:60962400-60963400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr5:60962400-60963400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr5:60962400-60963800	Enhancers	Brain Substantia Nigra	brain
9	chr5:60962400-60963800	Weak transcription	Pancreas	Pancrea
10	chr5:60962400-60963800	Weak transcription	Right Atrium	heart
11	chr5:60962400-60964200	Enhancers	Adipose Nuclei	Adipose
12	chr5:60962400-60964400	Enhancers	Liver	Liver
13	chr5:60962400-60965000	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr5:60962400-60965600	Enhancers	Brain Anterior Caudate	brain
15	chr5:60962600-60963400	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr5:60962600-60963600	Weak transcription	Lung	lung
17	chr5:60962600-60963600	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr5:60962600-60963800	Weak transcription	Brain Angular Gyrus	brain
19	chr5:60962600-60963800	Weak transcription	Duodenum Mucosa	Duodenum
20	chr5:60962600-60968000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr5:60962600-60968800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr5:60962600-60969000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr5:60963000-60964000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr5:60963000-60964200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr5:60963000-60964400	Enhancers	Fetal Intestine Large	intestine
26	chr5:60963000-60964600	Enhancers	Fetal Intestine Small	intestine
27	chr5:60963200-60965600	Enhancers	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links