Variant report

Variant	rs559120534
Chromosome Location	chr13:53061811-53061812
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr13:53061810-53061860	LNCaP	prostate:	n/a
2	chr13:53061810-53061860	NHBE	bronchial:	n/a
3	chr13:53061810-53061860	SK-N-SH	brain:	n/a
4	chr13:53061810-53061860	HMEC	breast:	n/a
5	chr13:53061810-53061860	HAEpiC	amniotic membrane:	n/a
6	chr13:53061810-53061860	SK-N-SH_RA	brain:	n/a
7	chr13:53061810-53061860	HPAEpiC	pulmonary alveolar:	n/a
8	chr13:53061810-53061860	ovcar-3	ovarian:	n/a
9	chr13:53061810-53061860	HEK293	kidney:	embryo
10	chr13:53061810-53061860	HCF	heart:	n/a
11	chr13:53061810-53061860	GM06990	blood:	n/a
12	chr13:53061810-53061860	HL-60	blood:	n/a
13	chr13:53061810-53061860	Caco-2	colon:	n/a
14	chr13:53061810-53061860	AoSMC	blood vessel:	n/a
15	chr13:53061810-53061860	BE2_C	brain:	n/a
16	chr13:53061810-53061860	AG09309	skin:	n/a
17	chr13:53061810-53061860	ProgFib	skin:	n/a
18	chr13:53061810-53061860	AG04450	lung:	fetal
19	chr13:53061810-53061860	AG09319	gingival:	n/a
20	chr13:53061810-53061860	NH-A	brain:	n/a
21	chr13:53061810-53061860	HUVEC	blood vessel:	n/a
22	chr13:53061810-53061860	AG10803	skin:	n/a
23	chr13:53061810-53061860	HCPEpiC	choroid plexus:	n/a
24	chr13:53061810-53061860	HIPEpiC	eye:	n/a
25	chr13:53061810-53061860	PrEC	prostate:	n/a
26	chr13:53061810-53061860	RPTEC	kidney:	n/a
27	chr13:53061810-53061860	K562	blood:	n/a
28	chr13:53061810-53061860	BJ	skin:	n/a
29	chr13:53061810-53061860	T-47D	breast:	n/a
30	chr13:53061810-53061860	A549	lung:	n/a
31	chr13:53061810-53061860	HRCEpiC	kidney:	n/a
32	chr13:53061810-53061860	GM19239	blood:	n/a
33	chr13:53061810-53061860	PFSK-1	brain:	n/a
34	chr13:53061810-53061860	MCF-7	breast:	n/a
35	chr13:53061810-53061860	U87	brain:	n/a
36	chr13:53061810-53061860	CMK	blood:	n/a
37	chr13:53061810-53061860	HNPCEpiC	eye:	n/a
38	chr13:53061810-53061860	AG04449	skin:	fetal
39	chr13:53061810-53061860	HCT-116	colon:	n/a
40	chr13:53061810-53061860	NHDF-neo	bronchial:	n/a
41	chr13:53061810-53061860	GM12878	blood:	n/a
42	chr13:53061810-53061860	HRPEpiC	eye:	n/a
43	chr13:53061810-53061860	GM12891	blood:	n/a
44	chr13:53061810-53061860	GM12892	blood:	n/a
45	chr13:53061810-53061860	Hepatocyte	liver:	n/a
46	chr13:53061810-53061860	SKMC	muscle:	n/a
47	chr13:53061810-53061860	HEEpiC	esophagus:	n/a
48	chr13:53061810-53061860	HRE	kidney:	n/a
49	chr13:53061810-53061860	HepG2	liver:	n/a
50	chr13:53061810-53061860	H1-hESC	embryonic stem cell:	embryo

No data

Variant related genes	Relation type
TPTE2P3	CpG island
LINC00345	CpG island
ENSG00000244471	CpG island

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934070	chr13:52362588-53174923	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
2	nsv1040931	chr13:52564792-53350914	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv541773	chr13:52564792-53350914	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv428288	chr13:52728370-53068132	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv900084	chr13:52835231-53119704	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	esv1838257	chr13:52971893-53231454	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
7	nsv900085	chr13:53022518-53216622	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
8	nsv900086	chr13:53030565-53208030	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
9	esv2421964	chr13:53051526-53160234	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1038132	chr13:53057359-53190994	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	nsv820041	chr13:53061338-53280588	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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