Variant report

Variant	rs559121965
Chromosome Location	chr4:82341526-82341527
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:82330902..82334984-chr4:82339313..82344776,5	K562	blood:
2	chr4:82340135..82342826-chr4:82350602..82352367,3	K562	blood:
3	chr4:82332819..82334854-chr4:82340131..82342446,3	K562	blood:
4	chr4:82327129..82328804-chr4:82341208..82343737,2	K562	blood:
5	chr4:82341314..82344179-chr4:82360678..82363894,3	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv829985	chr4:82199328-82353656	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv517921	chr4:82315470-82346835	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv4404	chr4:82340986-82386148	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82333200-82342600	Weak transcription	Brain Angular Gyrus	brain
2	chr4:82334400-82342800	Weak transcription	Brain Substantia Nigra	brain
3	chr4:82335000-82345600	Weak transcription	Aorta	Aorta
4	chr4:82339400-82350000	Weak transcription	Gastric	stomach
5	chr4:82339600-82342600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:82339600-82343000	Weak transcription	Small Intestine	intestine
7	chr4:82339800-82342400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr4:82340000-82342000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr4:82340200-82342200	Weak transcription	Stomach Mucosa	stomach
10	chr4:82340200-82342600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr4:82340200-82342600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr4:82340200-82345600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:82340400-82342400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr4:82340400-82342400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr4:82340400-82342600	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr4:82340600-82346600	Weak transcription	Primary T cells from cord blood	blood
17	chr4:82341000-82350600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr4:82341200-82342600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr4:82341200-82343400	Flanking Active TSS	K562	blood
20	chr4:82341200-82344000	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr4:82341200-82344000	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr4:82341200-82344200	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr4:82341400-82342600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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