Variant report

Variant	rs559140376
Chromosome Location	chr10:52010022-52010023
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HNF4A	chr10:52009862-52010228	HepG2	liver:	n/a	chr10:52010034-52010048
2	HDAC2	chr10:52009803-52010203	HepG2	liver:	n/a	n/a
3	EP300	chr10:52009758-52010209	HepG2	liver:	n/a	n/a
4	ELF1	chr10:52009862-52010146	HepG2	liver:	n/a	n/a
5	SP1	chr10:52009816-52010225	HepG2	liver:	n/a	n/a
6	SMC3	chr10:52009931-52010186	HepG2	liver:	n/a	n/a
7	NR2F2	chr10:52009760-52010351	HepG2	liver:	n/a	n/a
8	HNF4A	chr10:52009890-52010229	HepG2	liver:	n/a	chr10:52010034-52010048
9	EP300	chr10:52009812-52010254	HepG2	liver:	n/a	n/a
10	FOXA2	chr10:52009793-52010175	HepG2	liver:	n/a	n/a
11	CEBPB	chr10:52009901-52010147	HepG2	liver:	n/a	chr10:52010013-52010024
12	HNF4G	chr10:52009865-52010252	HepG2	liver:	n/a	chr10:52010034-52010048
13	CEBPB	chr10:52009838-52010190	HepG2	liver:	n/a	chr10:52010013-52010024
14	CEBPB	chr10:52009948-52010148	K562	blood:	n/a	chr10:52010013-52010024
15	TEAD4	chr10:52009754-52010258	HepG2	liver:	n/a	n/a
16	HDAC2	chr10:52009840-52010171	HepG2	liver:	n/a	n/a
17	FOXA1	chr10:52009682-52010194	HepG2	liver:	n/a	n/a
18	NR2F2	chr10:52009783-52010269	HepG2	liver:	n/a	n/a
19	FOXA1	chr10:52009790-52010120	HepG2	liver:	n/a	n/a
20	FOXA1	chr10:52009781-52010248	HepG2	liver:	n/a	n/a
21	HNF4G	chr10:52009828-52010149	HepG2	liver:	n/a	chr10:52010034-52010048
22	CEBPB	chr10:52009832-52010221	HepG2	liver:	n/a	chr10:52010013-52010024
23	CEBPB	chr10:52009830-52010200	HepG2	liver:	n/a	chr10:52010013-52010024
24	NFIC	chr10:52009817-52010160	HepG2	liver:	n/a	n/a
25	CEBPD	chr10:52009943-52010168	HepG2	liver:	n/a	n/a
26	FOXA1	chr10:52009694-52010196	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:52009441..52011844-chr10:52036005..52038580,2	K562	blood:

Variant related genes	Relation type
ASAH2	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518071	chr10:51595893-52157935	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1054775	chr10:51595893-52392361	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv1037778	chr10:51886486-52011986	Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1053903	chr10:51886486-52163991	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1040661	chr10:51886486-52164585	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv1051028	chr10:51886486-52164585	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv1037118	chr10:51886486-52167442	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv1051087	chr10:51886486-52447295	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
9	nsv916214	chr10:51886486-52458983	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
10	nsv918212	chr10:51886486-52465482	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
11	nsv817412	chr10:51911034-52432990	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
12	esv2830205	chr10:51978430-52135215	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
13	nsv1053293	chr10:51981959-52102649	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
14	nsv1046850	chr10:52009869-52135542	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
15	nsv540625	chr10:52009869-52135542	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52007400-52010200	Enhancers	Liver	Liver
2	chr10:52009400-52010200	Flanking Active TSS	Fetal Intestine Small	intestine
3	chr10:52010000-52010200	Flanking Active TSS	Duodenum Mucosa	Duodenum
4	chr10:52010000-52010400	Active TSS	Fetal Intestine Large	intestine
5	chr10:52010000-52011600	Flanking Active TSS	HepG2	liver

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