Variant report

Variant	rs559152518
Chromosome Location	chr6:39020234-39020235
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:39006048..39008440-chr6:39019617..39021203,2	K562	blood:

Variant related genes	Relation type
ENSG00000220556	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028088	chr6:38821047-39163549	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538205	chr6:38821047-39163549	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv885821	chr6:38843970-39039503	Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv948357	chr6:38920998-39035836	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1027064	chr6:38984374-39034516	Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1801734	chr6:38986164-39034484	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv528286	chr6:39019503-39060478	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39017200-39030200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:39017800-39020400	Enhancers	HMEC	breast
3	chr6:39017800-39020600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:39017800-39021000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:39017800-39026400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:39018800-39020400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:39018800-39023400	Enhancers	Pancreas	Pancrea
8	chr6:39019000-39021400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr6:39019400-39022200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:39019400-39022200	Weak transcription	Left Ventricle	heart
11	chr6:39019600-39020600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:39019600-39023600	Weak transcription	Right Atrium	heart
13	chr6:39019800-39020800	Weak transcription	Fetal Heart	heart
14	chr6:39019800-39020800	Weak transcription	Lung	lung
15	chr6:39019800-39022000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr6:39019800-39023800	Weak transcription	Right Ventricle	heart
17	chr6:39020000-39020400	Enhancers	Dnd41	blood
18	chr6:39020000-39022200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:39020000-39024000	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr6:39020200-39021600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:39020200-39021800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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