The 2.0 version of rSNPBase

Variant report

Variant rs55916275
Chromosome Location chr17:45410764-45410765
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:45402000-45428600 Weak transcription Spleen Spleen
2 chr17:45402000-45442600 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr17:45402200-45416800 Weak transcription Lung lung
4 chr17:45402200-45420400 Weak transcription Pancreas Pancrea
5 chr17:45402200-45446400 Weak transcription Colon Smooth Muscle Colon
6 chr17:45402200-45500800 Weak transcription Aorta Aorta
7 chr17:45402400-45411000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
8 chr17:45402400-45412200 Weak transcription Adipose Nuclei Adipose
9 chr17:45402400-45412800 Weak transcription Ovary ovary
10 chr17:45402400-45416000 Weak transcription Stomach Smooth Muscle stomach
11 chr17:45402400-45419400 Weak transcription Liver Liver
12 chr17:45402400-45419600 Weak transcription Rectal Mucosa Donor 31 rectum
13 chr17:45402400-45421200 Weak transcription Breast Myoepithelial Primary Cells Breast
14 chr17:45402400-45421400 Weak transcription Fetal Kidney kidney
15 chr17:45402400-45421600 Weak transcription Duodenum Smooth Muscle Duodenum
16 chr17:45402400-45423400 Weak transcription NHDF-Ad bronchial
17 chr17:45402400-45424200 Weak transcription Fetal Brain Male brain
18 chr17:45402400-45427200 Weak transcription Rectal Mucosa Donor 29 rectum
19 chr17:45402400-45428400 Weak transcription Fetal Adrenal Gland Adrenal Gland
20 chr17:45402400-45433600 Weak transcription Fetal Heart heart
21 chr17:45402400-45433600 Weak transcription Fetal Intestine Small intestine
22 chr17:45402400-45433600 Weak transcription Fetal Stomach stomach
23 chr17:45402400-45435800 Weak transcription Rectal Smooth Muscle rectum
24 chr17:45402400-45436000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
25 chr17:45402600-45416800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
26 chr17:45402600-45422200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
27 chr17:45402600-45423000 Weak transcription Primary T helper naive cells fromperipheralblood blood
28 chr17:45402600-45423400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
29 chr17:45402600-45424600 Weak transcription Primary T killer naive cells fromperipheralblood blood
30 chr17:45402600-45428800 Weak transcription Primary T helper cells fromperipheralblood blood
31 chr17:45402800-45422400 Weak transcription Duodenum Mucosa Duodenum
32 chr17:45402800-45440800 Weak transcription Primary T cells from cord blood blood
33 chr17:45403000-45413000 Weak transcription Primary monocytes fromperipheralblood blood
34 chr17:45403000-45429400 Weak transcription Placenta Placenta
35 chr17:45407600-45435800 Weak transcription Fetal Intestine Large intestine
36 chr17:45408200-45421000 Weak transcription Primary T helper naive cells from peripheral blood blood
37 chr17:45408800-45411000 Strong transcription Primary B cells from cord blood blood
38 chr17:45408800-45411200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
39 chr17:45409200-45413600 Weak transcription Fetal Muscle Leg muscle
40 chr17:45409200-45425200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
41 chr17:45409400-45419600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
42 chr17:45409600-45411000 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
43 chr17:45409800-45410800 Weak transcription Fetal Lung lung
44 chr17:45409800-45415200 Strong transcription Primary B cells from peripheral blood blood
45 chr17:45410200-45412600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
46 chr17:45410400-45411200 Strong transcription Primary hematopoietic stem cells blood

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Last update: Aug 31, 2015