Variant report

Variant	rs559179922
Chromosome Location	chr2:173207273-173207274
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	esv3434359	chr2:173206993-173207304	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173199600-173208000	Enhancers	Stomach Mucosa	stomach
2	chr2:173203600-173208400	Enhancers	Fetal Intestine Large	intestine
3	chr2:173204600-173218400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr2:173205200-173207400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:173205200-173207400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:173205200-173209000	Weak transcription	Brain Anterior Caudate	brain
7	chr2:173205400-173208000	Enhancers	Fetal Intestine Small	intestine
8	chr2:173205600-173209000	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr2:173205800-173207400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr2:173205800-173207600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr2:173205800-173207800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr2:173206000-173207600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr2:173206000-173207800	Enhancers	Ovary	ovary
14	chr2:173206800-173207400	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr2:173206800-173207800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr2:173206800-173207800	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr2:173206800-173207800	Enhancers	Gastric	stomach
18	chr2:173206800-173207800	Enhancers	Small Intestine	intestine
19	chr2:173206800-173208400	Enhancers	Pancreas	Pancrea
20	chr2:173207000-173207600	Enhancers	Spleen	Spleen
21	chr2:173207000-173207800	Enhancers	H1 Cell Line	embryonic stem cell
22	chr2:173207000-173207800	Enhancers	H9 Cell Line	embryonic stem cell
23	chr2:173207000-173207800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr2:173207000-173208000	Enhancers	Duodenum Mucosa	Duodenum
25	chr2:173207200-173207400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr2:173207200-173207600	Enhancers	Colonic Mucosa	Colon
27	chr2:173207200-173207800	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr2:173207200-173208000	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr2:173207200-173208400	Weak transcription	Left Ventricle	heart
30	chr2:173207200-173219200	Weak transcription	Right Atrium	heart

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