Variant report

Variant	rs55918252
Chromosome Location	chr7:70850180-70850181
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10081296	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10224429	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10235834	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10236004	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10262784	1.00[EUR][1000 genomes]
rs10266359	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10277210	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10281457	1.00[EUR][1000 genomes]
rs10440951	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6947624	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73360138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73360145	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73360155	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70841000-70853200	Weak transcription	Ovary	ovary
2	chr7:70846800-70850600	Enhancers	Fetal Heart	heart
3	chr7:70847800-70852600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:70848800-70851800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:70849400-70850400	Enhancers	Left Ventricle	heart
6	chr7:70849400-70850600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:70849400-70850600	Enhancers	H9 Cell Line	embryonic stem cell
8	chr7:70849400-70850600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr7:70849400-70850800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr7:70849800-70850400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:70849800-70850600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr7:70849800-70850800	Enhancers	H1 Cell Line	embryonic stem cell
13	chr7:70850000-70850600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr7:70850000-70850800	Enhancers	HUES6 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links