Variant report

Variant	rs559182952
Chromosome Location	chr17:16505927-16505928
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:16503812..16505978-chr17:16569342..16570894,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000264359	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934185	chr17:15552960-16551197	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	190 gene(s)	inside rSNPs	diseases
2	esv3330182	chr17:15652014-16569534	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
3	esv3446844	chr17:15654843-16572246	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
4	nsv1063459	chr17:15804228-16543593	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
5	nsv1063764	chr17:16171649-16662914	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	120 gene(s)	inside rSNPs	diseases
6	nsv1058448	chr17:16389870-16926287	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
7	esv3314567	chr17:16503527-16508025	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3451205	chr17:16504327-16508025	Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3343323	chr17:16504752-16507600	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv2560448	chr17:16505146-16507051	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv2152172	chr17:16505294-16506461	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv3314565	chr17:16505314-16506434	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv3489276	chr17:16505336-16506423	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv3346637	chr17:16505362-16506378	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	esv3281	chr17:16505362-16506493	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	esv3314566	chr17:16505370-16506368	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	esv3314569	chr17:16505378-16506400	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	esv3314568	chr17:16505395-16506371	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	esv3314570	chr17:16505450-16506299	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	esv3489277	chr17:16505450-16506299	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16505000-16511600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links