Variant report

Variant	rs559193356
Chromosome Location	chr6:35463814-35463815
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35463384..35465009-chr6:35703029..35705389,2	K562	blood:
2	chr6:35265003..35267090-chr6:35463346..35464932,2	K562	blood:
3	chr6:35310116..35312027-chr6:35462385..35465150,2	MCF-7	breast:
4	chr6:35463571..35465690-chr6:35654249..35656915,2	K562	blood:
5	chr6:35462442..35464169-chr6:35698121..35700196,2	MCF-7	breast:
6	chr6:35310114..35311915-chr6:35462651..35465491,3	MCF-7	breast:
7	chr6:35462682..35465009-chr6:35702407..35705389,2	K562	blood:
8	chr6:35418643..35423313-chr6:35462563..35468017,10	K562	blood:
9	chr6:35263661..35265616-chr6:35463054..35466039,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000096060	Chromatin interaction
ENSG00000112033	Chromatin interaction
ENSG00000023892	Chromatin interaction
ENSG00000157343	Chromatin interaction
ENSG00000232909	Chromatin interaction
ENSG00000112039	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528351	chr6:35377922-35465786	Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
2	nsv519370	chr6:35378778-35537406	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
3	nsv984463	chr6:35432948-35477634	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	67 gene(s)	inside rSNPs	diseases
4	nsv602911	chr6:35457396-35465483	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases
5	esv1843819	chr6:35457396-35465749	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
6	esv1851060	chr6:35457396-35465749	Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
7	esv1794339	chr6:35457396-35465786	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
8	esv1800978	chr6:35457396-35465786	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
9	esv1803037	chr6:35457396-35465786	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
10	esv1837448	chr6:35457396-35465786	Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
11	nsv462909	chr6:35457396-35502202	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
12	nsv602912	chr6:35457396-35502202	Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
13	nsv602913	chr6:35457842-35465422	Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases
14	esv3384067	chr6:35462874-35466272	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
15	nsv602914	chr6:35463202-35465109	Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
16	esv3507609	chr6:35463474-35466122	Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
17	esv3507610	chr6:35463474-35466122	Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
18	esv3440600	chr6:35463499-35466347	Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
19	esv2758048	chr6:35463741-35806504	Genic enhancers Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
20	esv2759420	chr6:35463741-35806504	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35456200-35464400	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr6:35461000-35465000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:35461000-35465000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr6:35461600-35464000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
5	chr6:35462000-35464000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr6:35462000-35464000	Flanking Active TSS	HSMM	muscle
7	chr6:35462400-35464400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:35462600-35464000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:35462800-35464000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
10	chr6:35463000-35464000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:35463000-35464000	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
12	chr6:35463000-35464000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:35463000-35464000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:35463000-35464000	Flanking Active TSS	Colonic Mucosa	Colon
15	chr6:35463000-35464000	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
16	chr6:35463000-35464000	Flanking Active TSS	Hela-S3	cervix
17	chr6:35463000-35464000	Flanking Active TSS	Osteobl	bone
18	chr6:35463000-35464200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:35463000-35464200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:35463000-35464200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
21	chr6:35463200-35464000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr6:35463200-35464000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr6:35463200-35464000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
24	chr6:35463200-35464000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
25	chr6:35463200-35464200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr6:35463200-35466000	Active TSS	HUES64 Cell Line	embryonic stem cell
27	chr6:35463200-35466200	Active TSS	Fetal Kidney	kidney
28	chr6:35463400-35464000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
29	chr6:35463400-35464000	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr6:35463400-35464000	Active TSS	Duodenum Smooth Muscle	Duodenum
31	chr6:35463400-35464000	Flanking Active TSS	Fetal Muscle Leg	muscle
32	chr6:35463400-35464200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr6:35463400-35464200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
34	chr6:35463400-35464200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr6:35463400-35464200	Flanking Active TSS	Adipose Nuclei	Adipose
36	chr6:35463400-35465600	Active TSS	Sigmoid Colon	Sigmoid Colon
37	chr6:35463400-35465800	Active TSS	Small Intestine	intestine
38	chr6:35463400-35466000	Active TSS	Breast Myoepithelial Primary Cells	Breast
39	chr6:35463600-35464000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr6:35463600-35464000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr6:35463600-35464000	Weak transcription	Brain Substantia Nigra	brain
42	chr6:35463600-35464000	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
43	chr6:35463600-35464000	Flanking Active TSS	Psoas Muscle	Psoas
44	chr6:35463600-35464000	Active TSS	Spleen	Spleen
45	chr6:35463600-35464000	Flanking Active TSS	K562	blood
46	chr6:35463600-35464200	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
47	chr6:35463600-35464400	Enhancers	Primary B cells from cord blood	blood
48	chr6:35463600-35464600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr6:35463600-35465400	Active TSS	Pancreas	Pancrea
50	chr6:35463600-35465400	Bivalent/Poised TSS	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links