Variant report

Variant	rs559194420
Chromosome Location	chr4:142422221-142422222
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880172	chr4:142355535-142565089	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv880173	chr4:142355535-142666106	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830094	chr4:142411738-142567788	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv964260	chr4:142413497-142434363	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv967689	chr4:142421303-142433549	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3466327	chr4:142422067-142422655	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv3515593	chr4:142422095-142422669	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv3515594	chr4:142422097-142422680	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv3515595	chr4:142422117-142422608	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
10	esv3466324	chr4:142422132-142422641	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv3466325	chr4:142422137-142422599	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
12	esv3515591	chr4:142422142-142422625	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
13	esv3515597	chr4:142422147-142422619	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
14	esv3466326	chr4:142422187-142422580	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
15	esv3515592	chr4:142422197-142422581	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
16	esv3466328	chr4:142422201-142422579	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
17	esv3515598	chr4:142422201-142422579	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142422200-142423200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:142422200-142424400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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