Variant report

Variant	rs559204555
Chromosome Location	chr7:4901691-4901692
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr7:4901532-4901721	GM12878	blood:	n/a	chr7:4901615-4901632 chr7:4901609-4901631 chr7:4901620-4901628

Variant related genes	Relation type
PAPOLB	TF binding region

Extended variants
information (count: 22 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529538	chr7:4509189-5151503	Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv530968	chr7:4572250-5418004	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv1031697	chr7:4677463-5241790	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
4	nsv538704	chr7:4677463-5241790	Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	nsv887378	chr7:4730535-4929721	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv887380	chr7:4760124-4929721	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
7	nsv823994	chr7:4792385-4928328	Weak transcription Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
8	nsv8033	chr7:4802287-5086597	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
9	nsv1022678	chr7:4810626-5113387	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
10	nsv538705	chr7:4810626-5113387	Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
11	nsv528748	chr7:4820581-5010993	Enhancers Strong transcription Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
12	nsv1029123	chr7:4821734-4919277	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
13	nsv1021170	chr7:4831361-5058033	Bivalent Enhancer Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
14	nsv538706	chr7:4831361-5058033	Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
15	nsv1025467	chr7:4850447-5021443	ZNF genes & repeats Bivalent/Poised TSS Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
16	nsv605979	chr7:4854592-4944514	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
17	nsv1021999	chr7:4862082-5003190	Genic enhancers Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
18	nsv538707	chr7:4862082-5003190	Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
19	nsv1033855	chr7:4862677-5069764	Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
20	nsv605980	chr7:4876057-5003373	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
21	nsv869165	chr7:4889618-5799719	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	352 gene(s)	inside rSNPs	diseases
22	nsv970439	chr7:4901682-4908069	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:4900400-4902200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:4900800-4902000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
3	chr7:4900800-4902200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
4	chr7:4901000-4901800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
5	chr7:4901000-4901800	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:4901000-4902000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:4901000-4902000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
8	chr7:4901000-4902000	Bivalent/Poised TSS	Primary B cells from cord blood	blood
9	chr7:4901000-4902000	Active TSS	Brain Anterior Caudate	brain
10	chr7:4901000-4902000	Active TSS	Fetal Kidney	kidney
11	chr7:4901000-4902200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
12	chr7:4901000-4902200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
13	chr7:4901000-4902200	Bivalent/Poised TSS	Primary T cells from cord blood	blood
14	chr7:4901000-4902200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr7:4901200-4901800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr7:4901200-4901800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr7:4901200-4901800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr7:4901200-4901800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr7:4901200-4901800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
20	chr7:4901200-4901800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
21	chr7:4901200-4901800	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr7:4901200-4901800	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
23	chr7:4901200-4901800	Active TSS	Adipose Nuclei	Adipose
24	chr7:4901200-4901800	Active TSS	Brain Inferior Temporal Lobe	brain
25	chr7:4901200-4901800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
26	chr7:4901200-4901800	Bivalent/Poised TSS	Fetal Intestine Large	intestine
27	chr7:4901200-4901800	Bivalent/Poised TSS	Fetal Intestine Small	intestine
28	chr7:4901200-4901800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
29	chr7:4901200-4901800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
30	chr7:4901200-4901800	Bivalent/Poised TSS	Fetal Thymus	thymus
31	chr7:4901200-4901800	Active TSS	Right Atrium	heart
32	chr7:4901200-4901800	Active TSS	Stomach Smooth Muscle	stomach
33	chr7:4901200-4901800	Bivalent/Poised TSS	HUVEC	blood vessel
34	chr7:4901200-4902000	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr7:4901200-4902000	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
36	chr7:4901200-4902000	Active TSS	Brain Angular Gyrus	brain
37	chr7:4901200-4902000	Bivalent/Poised TSS	Brain Germinal Matrix	brain
38	chr7:4901200-4902000	ZNF genes & repeats	Colon Smooth Muscle	Colon
39	chr7:4901200-4902000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
40	chr7:4901200-4902000	Bivalent/Poised TSS	Psoas Muscle	Psoas
41	chr7:4901200-4902000	Active TSS	Rectal Mucosa Donor 29	rectum
42	chr7:4901200-4902000	Active TSS	Right Ventricle	heart
43	chr7:4901200-4902000	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
44	chr7:4901200-4902000	ZNF genes & repeats	Spleen	Spleen
45	chr7:4901200-4902000	ZNF genes & repeats	HSMMtube	muscle
46	chr7:4901200-4902200	ZNF genes & repeats	Lung	lung
47	chr7:4901200-4902200	Active TSS	Rectal Smooth Muscle	rectum
48	chr7:4901400-4901800	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
49	chr7:4901400-4901800	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
50	chr7:4901400-4901800	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood

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