Variant report

Variant	rs559207454
Chromosome Location	chr12:2164276-2164277
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948480	chr12:1776217-2284333	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv898598	chr12:1939252-2215448	Strong transcription Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1040370	chr12:2021395-2671017	Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv948400	chr12:2022411-2601363	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv521838	chr12:2060580-2299680	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1035885	chr12:2077660-2310157	Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv541350	chr12:2077660-2310157	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1038722	chr12:2085035-2308205	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv541351	chr12:2085035-2308205	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv898601	chr12:2124955-2215448	Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv826182	chr12:2136395-2208074	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv826183	chr12:2147469-2257818	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv898602	chr12:2149786-2223740	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	esv3360073	chr12:2161716-2164564	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
15	nsv557007	chr12:2162369-2165956	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv557008	chr12:2162576-2165147	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:2160800-2166200	Active TSS	Brain Angular Gyrus	brain
2	chr12:2161000-2165800	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr12:2161000-2167000	Active TSS	Brain Inferior Temporal Lobe	brain
4	chr12:2161200-2164400	Bivalent/Poised TSS	Colonic Mucosa	Colon
5	chr12:2161200-2165200	Active TSS	Aorta	Aorta
6	chr12:2161200-2165600	Active TSS	Brain Hippocampus Middle	brain
7	chr12:2161200-2165800	Active TSS	Right Ventricle	heart
8	chr12:2161400-2164400	Active TSS	Breast Myoepithelial Primary Cells	Breast
9	chr12:2161400-2164800	Active TSS	Left Ventricle	heart
10	chr12:2161400-2165400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr12:2161400-2165400	Active TSS	NHLF	lung
12	chr12:2161400-2165800	Active TSS	Colon Smooth Muscle	Colon
13	chr12:2161400-2166200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
14	chr12:2161600-2165200	Bivalent/Poised TSS	Fetal Stomach	stomach
15	chr12:2161600-2165400	Active TSS	Brain Cingulate Gyrus	brain
16	chr12:2161600-2165600	Active TSS	Brain Anterior Caudate	brain
17	chr12:2162000-2164600	Bivalent/Poised TSS	Fetal Intestine Small	intestine
18	chr12:2162200-2165600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
19	chr12:2162600-2164800	Bivalent/Poised TSS	Fetal Intestine Large	intestine
20	chr12:2162800-2164400	Active TSS	Pancreas	Pancrea
21	chr12:2162800-2165000	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
22	chr12:2162800-2178600	Enhancers	Fetal Heart	heart
23	chr12:2163000-2165000	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
24	chr12:2163400-2164400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr12:2163400-2165000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr12:2163400-2165200	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
27	chr12:2163600-2164400	Flanking Bivalent TSS/Enh	Fetal Lung	lung
28	chr12:2163600-2164800	Flanking Bivalent TSS/Enh	Fetal Brain Male	brain
29	chr12:2163600-2165400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr12:2163600-2168600	Flanking Active TSS	Stomach Smooth Muscle	stomach
31	chr12:2163800-2164400	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr12:2163800-2164400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr12:2163800-2164400	Bivalent/Poised TSS	Fetal Kidney	kidney
34	chr12:2163800-2164600	Active TSS	Ovary	ovary
35	chr12:2163800-2164800	Active TSS	Lung	lung
36	chr12:2164000-2164400	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
37	chr12:2164000-2164400	Bivalent/Poised TSS	NH-A	brain
38	chr12:2164000-2164600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr12:2164000-2164800	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
40	chr12:2164000-2165200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr12:2164000-2165200	Flanking Active TSS	Osteobl	bone
42	chr12:2164000-2165400	Weak transcription	Gastric	stomach
43	chr12:2164000-2165800	Enhancers	Spleen	Spleen
44	chr12:2164200-2164400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
45	chr12:2164200-2164400	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
46	chr12:2164200-2164400	Flanking Bivalent TSS/Enh	Rectal Smooth Muscle	rectum
47	chr12:2164200-2165000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr12:2164200-2165000	Active TSS	Right Atrium	heart
49	chr12:2164200-2165000	Flanking Active TSS	NHDF-Ad	bronchial
50	chr12:2164200-2165600	Bivalent/Poised TSS	Brain Germinal Matrix	brain

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