Variant report

Variant	rs55922146
Chromosome Location	chr14:32466720-32466721
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32464951..32467847-chr14:32471543..32473139,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56140654	1.00[AMR][1000 genomes]
rs56952661	1.00[AMR][1000 genomes]
rs60893091	1.00[AMR][1000 genomes]
rs61549350	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564182	chr14:32110519-32584337	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1046526	chr14:32110537-32567426	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32460800-32466800	Weak transcription	Adipose Nuclei	Adipose
2	chr14:32461400-32466800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr14:32462800-32466800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr14:32462800-32467000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr14:32462800-32468200	Enhancers	A549	lung
6	chr14:32464000-32466800	Weak transcription	Fetal Muscle Leg	muscle
7	chr14:32464000-32467400	Weak transcription	Brain Anterior Caudate	brain
8	chr14:32464200-32467000	Weak transcription	Fetal Kidney	kidney
9	chr14:32464200-32467400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr14:32464200-32467400	Weak transcription	Right Atrium	heart
11	chr14:32464200-32475800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr14:32464800-32466800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr14:32464800-32467400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr14:32464800-32467400	Weak transcription	Fetal Brain Male	brain
15	chr14:32465000-32466800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr14:32465000-32467000	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr14:32465000-32472600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr14:32465000-32479200	Weak transcription	Left Ventricle	heart
19	chr14:32465400-32467600	Enhancers	Fetal Intestine Small	intestine
20	chr14:32465400-32468000	Enhancers	Osteobl	bone
21	chr14:32465600-32466800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr14:32465600-32466800	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr14:32465600-32467800	Enhancers	Fetal Intestine Large	intestine
24	chr14:32465600-32468200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr14:32465800-32467200	Enhancers	Right Ventricle	heart
26	chr14:32466000-32467000	Enhancers	Stomach Mucosa	stomach
27	chr14:32466000-32467400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr14:32466000-32467400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr14:32466000-32467800	Enhancers	Fetal Heart	heart
30	chr14:32466200-32467000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr14:32466200-32467200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr14:32466600-32466800	Weak transcription	Fetal Stomach	stomach
33	chr14:32466600-32467000	Enhancers	Duodenum Mucosa	Duodenum
34	chr14:32466600-32467800	Enhancers	Psoas Muscle	Psoas

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