Variant report

Variant	rs559230309
Chromosome Location	chr7:140783140-140783141
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889248	chr7:140754785-140809205	Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3417140	chr7:140768130-140783190	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3336433	chr7:140783089-140892541	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140774800-140783200	Weak transcription	Pancreas	Pancrea
2	chr7:140776800-140783200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr7:140776800-140783200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr7:140776800-140783200	Weak transcription	Brain Angular Gyrus	brain
5	chr7:140776800-140783200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr7:140776800-140783200	Weak transcription	Fetal Brain Male	brain
7	chr7:140777000-140785000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr7:140778000-140793200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr7:140778800-140783200	Weak transcription	Psoas Muscle	Psoas
10	chr7:140778800-140794400	Weak transcription	Fetal Brain Female	brain
11	chr7:140780200-140783200	Weak transcription	Gastric	stomach
12	chr7:140782200-140783200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr7:140782400-140783200	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr7:140782600-140783200	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr7:140782600-140786400	Weak transcription	Brain Germinal Matrix	brain
16	chr7:140782800-140783200	Enhancers	H9 Cell Line	embryonic stem cell
17	chr7:140782800-140783200	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr7:140783000-140783200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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