The 2.0 version of rSNPBase

Variant report

Variant rs559236273
Chromosome Location chr5:145210444-145210445
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:57 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:145162800-145212800 Weak transcription Rectal Smooth Muscle rectum
2 chr5:145170600-145213400 Weak transcription Placenta Amnion Placenta Amnion
3 chr5:145172800-145214200 Weak transcription Right Ventricle heart
4 chr5:145183600-145214000 Weak transcription Fetal Kidney kidney
5 chr5:145195200-145212800 Weak transcription Colonic Mucosa Colon
6 chr5:145196200-145211800 Weak transcription Gastric stomach
7 chr5:145196800-145214000 Weak transcription Fetal Stomach stomach
8 chr5:145198000-145213600 Weak transcription Stomach Smooth Muscle stomach
9 chr5:145198800-145212000 Weak transcription Aorta Aorta
10 chr5:145201400-145214200 Weak transcription Lung lung
11 chr5:145207200-145214200 Weak transcription Sigmoid Colon Sigmoid Colon
12 chr5:145207400-145212600 Weak transcription Fetal Intestine Small intestine
13 chr5:145207400-145212800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
14 chr5:145207400-145213800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
15 chr5:145207400-145214000 Weak transcription NHEK skin
16 chr5:145208400-145213600 Weak transcription Skeletal Muscle Female skeletal muscle
17 chr5:145208800-145213400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
18 chr5:145209000-145210800 Enhancers Liver Liver
19 chr5:145209000-145211000 Enhancers Muscle Satellite Cultured Cells --
20 chr5:145209000-145211200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
21 chr5:145209000-145211200 Enhancers Fetal Adrenal Gland Adrenal Gland
22 chr5:145209000-145211200 Enhancers HUVEC blood vessel
23 chr5:145209000-145211400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
24 chr5:145209000-145211600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
25 chr5:145209000-145211600 Enhancers Rectal Mucosa Donor 31 rectum
26 chr5:145209000-145213400 Enhancers HepG2 liver
27 chr5:145209200-145211000 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
28 chr5:145209200-145211000 Enhancers Fetal Lung lung
29 chr5:145209200-145211000 Enhancers NHLF lung
30 chr5:145209200-145211000 Enhancers Osteobl bone
31 chr5:145209200-145211200 Enhancers Primary hematopoietic stem cells blood
32 chr5:145209200-145211200 Enhancers Colon Smooth Muscle Colon
33 chr5:145209200-145211400 Enhancers Primary hematopoietic stem cells short term culture blood
34 chr5:145209200-145212600 Enhancers K562 blood
35 chr5:145209400-145212800 Weak transcription Ovary ovary
36 chr5:145209400-145212800 Weak transcription Pancreas Pancrea
37 chr5:145209600-145211200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
38 chr5:145209600-145211200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
39 chr5:145209600-145213200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
40 chr5:145209800-145210600 Enhancers Primary T cells from cord blood blood
41 chr5:145209800-145212200 Weak transcription Fetal Intestine Large intestine
42 chr5:145209800-145214000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
43 chr5:145209800-145214200 Weak transcription Small Intestine intestine
44 chr5:145209800-145214200 Weak transcription Hela-S3 cervix
45 chr5:145210000-145210600 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
46 chr5:145210000-145210800 Weak transcription Left Ventricle heart
47 chr5:145210000-145211400 Weak transcription Stomach Mucosa stomach
48 chr5:145210200-145210800 Enhancers Duodenum Smooth Muscle Duodenum
49 chr5:145210400-145210600 Enhancers Duodenum Mucosa Duodenum
50 chr5:145210400-145210600 Weak transcription HSMMtube muscle

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Last update: Aug 31, 2015