Variant report

Variant	rs55925503
Chromosome Location	chr6:75317893-75317894
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17771572	1.00[AFR][1000 genomes]
rs56286066	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830694	chr6:75245483-75446282	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75307000-75319000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:75315200-75318000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:75315400-75318000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:75315400-75318400	Enhancers	NHLF	lung
5	chr6:75315800-75320600	Enhancers	HUVEC	blood vessel
6	chr6:75316000-75318000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:75316400-75318400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr6:75316600-75318000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:75316600-75318000	Enhancers	HMEC	breast
10	chr6:75316600-75318000	Enhancers	NH-A	brain
11	chr6:75316600-75318400	Enhancers	HSMM	muscle
12	chr6:75316600-75318400	Enhancers	NHDF-Ad	bronchial
13	chr6:75316600-75320600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:75316600-75320800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:75316600-75322200	Enhancers	Osteobl	bone
16	chr6:75316800-75318400	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr6:75316800-75318400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:75317000-75318600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:75317000-75319000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:75317000-75321400	Enhancers	Muscle Satellite Cultured Cells	--
21	chr6:75317000-75322200	Enhancers	Hela-S3	cervix
22	chr6:75317200-75318000	Enhancers	A549	lung
23	chr6:75317200-75322200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:75317600-75318000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr6:75317600-75318000	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr6:75317600-75318000	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr6:75317600-75318200	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr6:75317800-75318000	Enhancers	Adipose Nuclei	Adipose
29	chr6:75317800-75318000	Enhancers	Colon Smooth Muscle	Colon
30	chr6:75317800-75318000	Enhancers	HSMMtube	muscle

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