Variant report

Variant	rs55925534
Chromosome Location	chr5:146818702-146818703
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs72833357	1.00[AMR][1000 genomes]
rs72833378	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5055	chr5:146812672-146857424	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146804800-146831600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr5:146805800-146819200	Enhancers	Colon Smooth Muscle	Colon
3	chr5:146808200-146818800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:146809400-146819200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr5:146810000-146823400	Weak transcription	Small Intestine	intestine
6	chr5:146810800-146819400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr5:146810800-146822600	Genic enhancers	HUES48 Cell Line	embryonic stem cell
8	chr5:146811400-146818800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr5:146811600-146818800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr5:146812200-146825600	Weak transcription	Placenta	Placenta
11	chr5:146812400-146824400	Weak transcription	Fetal Stomach	stomach
12	chr5:146813000-146831800	Weak transcription	Right Ventricle	heart
13	chr5:146813200-146828200	Weak transcription	NHLF	lung
14	chr5:146813600-146822600	Genic enhancers	HUES64 Cell Line	embryonic stem cell
15	chr5:146813800-146819600	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr5:146814200-146826400	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr5:146815200-146822000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr5:146815400-146819400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr5:146815600-146818800	Enhancers	Fetal Brain Male	brain
20	chr5:146815800-146819000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr5:146816000-146818800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr5:146816200-146819200	Enhancers	NH-A	brain
23	chr5:146816200-146819400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr5:146816600-146820600	Enhancers	Stomach Smooth Muscle	stomach
25	chr5:146816800-146820200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr5:146816800-146823400	Weak transcription	Left Ventricle	heart
27	chr5:146816800-146826200	Weak transcription	Lung	lung
28	chr5:146817200-146824600	Weak transcription	Fetal Muscle Leg	muscle
29	chr5:146817200-146825600	Weak transcription	Right Atrium	heart
30	chr5:146817200-146826200	Weak transcription	Psoas Muscle	Psoas
31	chr5:146817200-146829000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr5:146817200-146830800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr5:146817200-146831800	Weak transcription	Esophagus	oesophagus
34	chr5:146817400-146818800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr5:146817400-146819000	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr5:146817400-146820000	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr5:146817400-146824600	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr5:146817400-146824600	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr5:146817600-146818800	Weak transcription	Osteobl	bone
40	chr5:146817800-146818800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr5:146817800-146818800	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr5:146817800-146818800	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr5:146817800-146819000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr5:146818000-146819200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr5:146818000-146819200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr5:146818000-146819200	Enhancers	Spleen	Spleen
47	chr5:146818200-146819000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr5:146818200-146819000	Weak transcription	Fetal Brain Female	brain
49	chr5:146818200-146819400	Genic enhancers	Brain Germinal Matrix	brain
50	chr5:146818200-146824600	Weak transcription	Brain Anterior Caudate	brain

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