Variant report

Variant	rs55925656
Chromosome Location	chr2:12060697-12060698
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12614423	0.84[ASN][1000 genomes]
rs1440040	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs62115003	0.88[ASN][1000 genomes]
rs62115005	0.84[ASN][1000 genomes]
rs6736037	0.89[ASN][1000 genomes]
rs7564098	0.85[ASN][1000 genomes]
rs7590488	0.89[ASN][1000 genomes]
rs7599141	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003899	chr2:11789374-12248081	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv833403	chr2:11944552-12125634	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:12042000-12061200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:12056000-12064800	Weak transcription	GM12878-XiMat	blood
3	chr2:12057400-12060800	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr2:12057400-12064400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr2:12059200-12063200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr2:12059600-12061600	Enhancers	K562	blood
7	chr2:12060200-12062200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr2:12060400-12060800	Enhancers	Esophagus	oesophagus
9	chr2:12060400-12061200	Enhancers	Spleen	Spleen
10	chr2:12060400-12069200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr2:12060600-12061400	Enhancers	Primary T cells from cord blood	blood
12	chr2:12060600-12062000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:12060600-12062200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr2:12060600-12062200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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